| 1 | #ifndef ARBDBT_H |
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| 2 | #define ARBDBT_H |
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| 3 | |
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| 4 | #ifndef ARBDB_H |
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| 5 | #include <arbdb.h> |
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| 6 | #endif |
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| 7 | |
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| 8 | #define GBT_SPECIES_INDEX_SIZE 10000L |
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| 9 | #define GBT_SAI_INDEX_SIZE 1000L |
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| 10 | |
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| 11 | #define GB_GROUP_NAME_MAX 256 |
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| 12 | |
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| 13 | #define GBT_TREE_ELEMENTS(type) \ |
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| 14 | bool is_leaf; \ |
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| 15 | bool tree_is_one_piece_of_memory; \ |
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| 16 | type *father, *leftson, *rightson; \ |
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| 17 | GBT_LEN leftlen, rightlen; \ |
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| 18 | GBDATA *gb_node; \ |
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| 19 | char *name; \ |
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| 20 | char *remark_branch |
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| 21 | |
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| 22 | // remark_branch normally contains some bootstrap value in format 'xx%' |
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| 23 | // if you store other info there, please make sure that this info does not |
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| 24 | // start with digits!! |
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| 25 | // Otherwise the tree export routines will not work correctly! |
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| 26 | // -------------------------------------------------------------------------------- |
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| 27 | |
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| 28 | #define CLEAR_GBT_TREE_ELEMENTS(tree_obj_ptr) \ |
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| 29 | (tree_obj_ptr)->is_leaf = false; \ |
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| 30 | (tree_obj_ptr)->tree_is_one_piece_of_memory = false; \ |
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| 31 | (tree_obj_ptr)->father = 0; \ |
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| 32 | (tree_obj_ptr)->leftson = 0; \ |
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| 33 | (tree_obj_ptr)->rightson = 0; \ |
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| 34 | (tree_obj_ptr)->leftlen = 0; \ |
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| 35 | (tree_obj_ptr)->rightlen = 0; \ |
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| 36 | (tree_obj_ptr)->gb_node = 0; \ |
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| 37 | (tree_obj_ptr)->name = 0; \ |
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| 38 | (tree_obj_ptr)->remark_branch = 0 |
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| 39 | |
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| 40 | #define AWAR_ERROR_CONTAINER "tmp/message/pending" |
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| 41 | |
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| 42 | #ifdef FAKE_VTAB_PTR |
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| 43 | // if defined, FAKE_VTAB_PTR contains 'char' |
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| 44 | typedef FAKE_VTAB_PTR virtualTable; |
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| 45 | #define GBT_VTAB_AND_TREE_ELEMENTS(type) \ |
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| 46 | virtualTable *dummy_virtual; \ |
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| 47 | GBT_TREE_ELEMENTS(type) |
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| 48 | #else |
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| 49 | #define GBT_VTAB_AND_TREE_ELEMENTS(type) GBT_TREE_ELEMENTS(type) |
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| 50 | #endif |
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| 51 | |
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| 52 | struct GBT_TREE { |
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| 53 | GBT_VTAB_AND_TREE_ELEMENTS(GBT_TREE); |
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| 54 | }; |
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| 55 | |
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| 56 | enum GBT_TREE_REMOVE_TYPE { |
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| 57 | GBT_REMOVE_MARKED = 1, |
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| 58 | GBT_REMOVE_NOT_MARKED = 2, |
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| 59 | GBT_REMOVE_DELETED = 4, |
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| 60 | |
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| 61 | // please keep AWT_REMOVE_TYPE in sync with GBT_TREE_REMOVE_TYPE |
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| 62 | // see ../SL/AP_TREE/AP_Tree.hxx@sync_GBT_TREE_REMOVE_TYPE_AWT_REMOVE_TYPE |
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| 63 | }; |
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| 64 | |
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| 65 | #define GBT_TREE_AWAR_SRT " = :\n=:*=tree_*1:tree_tree_*=tree_*1" |
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| 66 | #define GBT_ALI_AWAR_SRT " =:\n=:*=ali_*1:ali_ali_*=ali_*1" |
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| 67 | |
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| 68 | typedef GB_ERROR (*species_callback)(GBDATA *gb_species, int *clientdata); |
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| 69 | |
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| 70 | #include <ad_t_prot.h> |
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| 71 | |
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| 72 | #define CHANGE_KEY_PATH "presets/key_data" |
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| 73 | #define CHANGE_KEY_PATH_GENES "presets/gene_key_data" |
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| 74 | #define CHANGE_KEY_PATH_EXPERIMENTS "presets/experiment_key_data" |
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| 75 | |
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| 76 | #define CHANGEKEY "key" |
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| 77 | #define CHANGEKEY_NAME "key_name" |
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| 78 | #define CHANGEKEY_TYPE "key_type" |
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| 79 | #define CHANGEKEY_HIDDEN "key_hidden" |
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| 80 | |
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| 81 | |
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| 82 | #else |
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| 83 | #error arbdbt.h included twice |
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| 84 | #endif |
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