| 1 | .SUFFIXES: .o .a .cxx .depend |
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| 2 | |
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| 3 | OBJECTS= $(subst .cxx,.o,$(wildcard *.cxx)) |
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| 4 | |
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| 5 | $(MAIN): $(OBJECTS) check_error_codes |
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| 6 | $(LINK_STATIC_LIB) $(MAIN) $(OBJECTS) |
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| 7 | |
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| 8 | check_error_codes: |
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| 9 | @./show_error_list.pl -check |
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| 10 | |
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| 11 | .cxx.o: |
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| 12 | $(CPP) $(cflags) -c $< $(AINCLUDES) $(POST_COMPILE) |
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| 13 | |
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| 14 | proto: |
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| 15 | ../AISC_MKPTPS/aisc_mkpt -P -G -A -w prototypes.h $(OBJECTS:.o=.cxx) >prototypes.h.tmp |
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| 16 | ../SOURCE_TOOLS/mv_if_diff prototypes.h.tmp prototypes.h |
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| 17 | |
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| 18 | clean: |
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| 19 | rm -f *.o $(BINARY) |
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| 20 | |
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| 21 | DEPENDS = $(OBJECTS:.o=.depend) |
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| 22 | depends: $(DEPENDS) |
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| 23 | @cat $(DEPENDS) | grep -v '^#' >>Makefile |
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| 24 | @rm $(DEPENDS) |
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| 25 | $(DEPENDS): depend.init |
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| 26 | depend.init: |
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| 27 | $(MAKEDEPEND) $(MAKEDEPENDFLAGS) 2>/dev/null # remove dependencies |
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| 28 | .c.depend: |
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| 29 | $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@ |
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| 30 | .cxx.depend: |
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| 31 | $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@ |
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| 32 | |
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| 33 | # DO NOT DELETE THIS LINE -- make depend depends on it. |
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| 34 | |
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| 35 | # Do not add dependencies manually - use 'make depend' in $ARBHOME |
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| 36 | # For formatting issues see SOURCE_TOOLS/fix_depends.pl |
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| 37 | |
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| 38 | convert.o: defs.h |
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| 39 | convert.o: embl.h |
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| 40 | convert.o: fun.h |
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| 41 | convert.o: genbank.h |
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| 42 | convert.o: global.h |
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| 43 | convert.o: input_format.h |
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| 44 | convert.o: macke.h |
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| 45 | convert.o: parser.h |
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| 46 | convert.o: prototypes.h |
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| 47 | convert.o: rdp_info.h |
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| 48 | convert.o: reader.h |
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| 49 | convert.o: refs.h |
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| 50 | convert.o: seq.h |
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| 51 | convert.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 52 | convert.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 53 | convert.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 54 | convert.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 55 | convert.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 56 | convert.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 57 | convert.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 58 | convert.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 59 | convert.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 60 | |
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| 61 | date.o: fun.h |
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| 62 | date.o: global.h |
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| 63 | date.o: prototypes.h |
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| 64 | date.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 65 | date.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 66 | date.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 67 | date.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 68 | date.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 69 | date.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 70 | date.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 71 | date.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 72 | date.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 73 | date.o: $(ARBHOME)/INCLUDE/test_unit.h |
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| 74 | |
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| 75 | embl.o: defs.h |
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| 76 | embl.o: embl.h |
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| 77 | embl.o: fun.h |
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| 78 | embl.o: genbank.h |
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| 79 | embl.o: global.h |
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| 80 | embl.o: input_format.h |
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| 81 | embl.o: macke.h |
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| 82 | embl.o: parser.h |
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| 83 | embl.o: prototypes.h |
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| 84 | embl.o: rdp_info.h |
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| 85 | embl.o: reader.h |
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| 86 | embl.o: refs.h |
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| 87 | embl.o: seq.h |
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| 88 | embl.o: wrap.h |
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| 89 | embl.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 90 | embl.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 91 | embl.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 92 | embl.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 93 | embl.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 94 | embl.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 95 | embl.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 96 | embl.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 97 | embl.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 98 | embl.o: $(ARBHOME)/INCLUDE/test_unit.h |
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| 99 | |
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| 100 | fconv.o: defs.h |
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| 101 | fconv.o: fun.h |
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| 102 | fconv.o: global.h |
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| 103 | fconv.o: prototypes.h |
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| 104 | fconv.o: $(ARBHOME)/INCLUDE/ad_prot.h |
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| 105 | fconv.o: $(ARBHOME)/INCLUDE/ad_t_prot.h |
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| 106 | fconv.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 107 | fconv.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 108 | fconv.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 109 | fconv.o: $(ARBHOME)/INCLUDE/arb_error.h |
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| 110 | fconv.o: $(ARBHOME)/INCLUDE/arb_file.h |
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| 111 | fconv.o: $(ARBHOME)/INCLUDE/arb_msg.h |
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| 112 | fconv.o: $(ARBHOME)/INCLUDE/arb_string.h |
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| 113 | fconv.o: $(ARBHOME)/INCLUDE/arbdb.h |
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| 114 | fconv.o: $(ARBHOME)/INCLUDE/arbdb_base.h |
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| 115 | fconv.o: $(ARBHOME)/INCLUDE/arbdbt.h |
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| 116 | fconv.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 117 | fconv.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 118 | fconv.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 119 | fconv.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 120 | fconv.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 121 | fconv.o: $(ARBHOME)/INCLUDE/static_assert.h |
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| 122 | fconv.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 123 | fconv.o: $(ARBHOME)/INCLUDE/test_unit.h |
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| 124 | |
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| 125 | gcg.o: defs.h |
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| 126 | gcg.o: embl.h |
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| 127 | gcg.o: fun.h |
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| 128 | gcg.o: genbank.h |
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| 129 | gcg.o: global.h |
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| 130 | gcg.o: input_format.h |
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| 131 | gcg.o: macke.h |
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| 132 | gcg.o: parser.h |
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| 133 | gcg.o: prototypes.h |
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| 134 | gcg.o: rdp_info.h |
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| 135 | gcg.o: reader.h |
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| 136 | gcg.o: refs.h |
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| 137 | gcg.o: seq.h |
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| 138 | gcg.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 139 | gcg.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 140 | gcg.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 141 | gcg.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 142 | gcg.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 143 | gcg.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 144 | gcg.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 145 | gcg.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 146 | gcg.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 147 | |
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| 148 | genbank.o: defs.h |
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| 149 | genbank.o: fun.h |
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| 150 | genbank.o: genbank.h |
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| 151 | genbank.o: global.h |
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| 152 | genbank.o: input_format.h |
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| 153 | genbank.o: parser.h |
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| 154 | genbank.o: prototypes.h |
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| 155 | genbank.o: rdp_info.h |
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| 156 | genbank.o: reader.h |
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| 157 | genbank.o: refs.h |
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| 158 | genbank.o: seq.h |
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| 159 | genbank.o: wrap.h |
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| 160 | genbank.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 161 | genbank.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 162 | genbank.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 163 | genbank.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 164 | genbank.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 165 | genbank.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 166 | genbank.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 167 | genbank.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 168 | genbank.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 169 | |
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| 170 | macke.o: defs.h |
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| 171 | macke.o: fun.h |
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| 172 | macke.o: global.h |
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| 173 | macke.o: input_format.h |
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| 174 | macke.o: macke.h |
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| 175 | macke.o: parser.h |
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| 176 | macke.o: prototypes.h |
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| 177 | macke.o: rdp_info.h |
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| 178 | macke.o: reader.h |
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| 179 | macke.o: seq.h |
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| 180 | macke.o: wrap.h |
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| 181 | macke.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 182 | macke.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 183 | macke.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 184 | macke.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 185 | macke.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 186 | macke.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 187 | macke.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 188 | macke.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 189 | macke.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 190 | |
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| 191 | main.o: defs.h |
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| 192 | main.o: fun.h |
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| 193 | main.o: global.h |
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| 194 | main.o: prototypes.h |
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| 195 | main.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 196 | main.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 197 | main.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 198 | main.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 199 | main.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 200 | main.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 201 | main.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 202 | main.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 203 | main.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 204 | main.o: $(ARBHOME)/INCLUDE/test_unit.h |
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| 205 | |
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| 206 | mg.o: defs.h |
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| 207 | mg.o: fun.h |
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| 208 | mg.o: genbank.h |
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| 209 | mg.o: global.h |
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| 210 | mg.o: input_format.h |
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| 211 | mg.o: macke.h |
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| 212 | mg.o: parser.h |
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| 213 | mg.o: prototypes.h |
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| 214 | mg.o: rdp_info.h |
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| 215 | mg.o: reader.h |
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| 216 | mg.o: refs.h |
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| 217 | mg.o: seq.h |
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| 218 | mg.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 219 | mg.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 220 | mg.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 221 | mg.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 222 | mg.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 223 | mg.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 224 | mg.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 225 | mg.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 226 | mg.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 227 | |
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| 228 | paup.o: ali.h |
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| 229 | paup.o: defs.h |
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| 230 | paup.o: fun.h |
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| 231 | paup.o: global.h |
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| 232 | paup.o: input_format.h |
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| 233 | paup.o: paup.h |
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| 234 | paup.o: prototypes.h |
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| 235 | paup.o: reader.h |
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| 236 | paup.o: seq.h |
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| 237 | paup.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 238 | paup.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 239 | paup.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 240 | paup.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 241 | paup.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 242 | paup.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 243 | paup.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 244 | paup.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 245 | paup.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 246 | |
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| 247 | phylip.o: ali.h |
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| 248 | phylip.o: defs.h |
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| 249 | phylip.o: fun.h |
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| 250 | phylip.o: global.h |
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| 251 | phylip.o: input_format.h |
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| 252 | phylip.o: prototypes.h |
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| 253 | phylip.o: reader.h |
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| 254 | phylip.o: seq.h |
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| 255 | phylip.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 256 | phylip.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 257 | phylip.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 258 | phylip.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 259 | phylip.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 260 | phylip.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 261 | phylip.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 262 | phylip.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 263 | phylip.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 264 | |
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| 265 | printable.o: ali.h |
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| 266 | printable.o: defs.h |
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| 267 | printable.o: fun.h |
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| 268 | printable.o: global.h |
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| 269 | printable.o: input_format.h |
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| 270 | printable.o: prototypes.h |
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| 271 | printable.o: reader.h |
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| 272 | printable.o: seq.h |
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| 273 | printable.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 274 | printable.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 275 | printable.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 276 | printable.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 277 | printable.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 278 | printable.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 279 | printable.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 280 | printable.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 281 | printable.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 282 | |
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| 283 | rdp_info.o: defs.h |
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| 284 | rdp_info.o: fun.h |
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| 285 | rdp_info.o: global.h |
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| 286 | rdp_info.o: input_format.h |
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| 287 | rdp_info.o: prototypes.h |
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| 288 | rdp_info.o: rdp_info.h |
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| 289 | rdp_info.o: reader.h |
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| 290 | rdp_info.o: seq.h |
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| 291 | rdp_info.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 292 | rdp_info.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 293 | rdp_info.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 294 | rdp_info.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 295 | rdp_info.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 296 | rdp_info.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 297 | rdp_info.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 298 | rdp_info.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 299 | rdp_info.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 300 | |
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| 301 | reader.o: defs.h |
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| 302 | reader.o: fun.h |
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| 303 | reader.o: global.h |
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| 304 | reader.o: input_format.h |
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| 305 | reader.o: prototypes.h |
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| 306 | reader.o: reader.h |
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| 307 | reader.o: seq.h |
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| 308 | reader.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 309 | reader.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 310 | reader.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 311 | reader.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 312 | reader.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 313 | reader.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 314 | reader.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 315 | reader.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 316 | reader.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 317 | |
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| 318 | seq.o: ali.h |
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| 319 | seq.o: defs.h |
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| 320 | seq.o: fun.h |
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| 321 | seq.o: global.h |
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| 322 | seq.o: input_format.h |
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| 323 | seq.o: prototypes.h |
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| 324 | seq.o: reader.h |
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| 325 | seq.o: seq.h |
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| 326 | seq.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 327 | seq.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 328 | seq.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 329 | seq.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 330 | seq.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 331 | seq.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 332 | seq.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 333 | seq.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 334 | seq.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 335 | |
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| 336 | util.o: defs.h |
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| 337 | util.o: fun.h |
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| 338 | util.o: global.h |
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| 339 | util.o: input_format.h |
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| 340 | util.o: prototypes.h |
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| 341 | util.o: reader.h |
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| 342 | util.o: seq.h |
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| 343 | util.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 344 | util.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 345 | util.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 346 | util.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 347 | util.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 348 | util.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 349 | util.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 350 | util.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 351 | util.o: $(ARBHOME)/INCLUDE/test_global.h |
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| 352 | |
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| 353 | wrap.o: defs.h |
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| 354 | wrap.o: fun.h |
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| 355 | wrap.o: global.h |
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| 356 | wrap.o: input_format.h |
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| 357 | wrap.o: prototypes.h |
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| 358 | wrap.o: reader.h |
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| 359 | wrap.o: seq.h |
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| 360 | wrap.o: wrap.h |
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| 361 | wrap.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 362 | wrap.o: $(ARBHOME)/INCLUDE/arb_core.h |
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| 363 | wrap.o: $(ARBHOME)/INCLUDE/arb_defs.h |
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| 364 | wrap.o: $(ARBHOME)/INCLUDE/arbtools.h |
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| 365 | wrap.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 366 | wrap.o: $(ARBHOME)/INCLUDE/dupstr.h |
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| 367 | wrap.o: $(ARBHOME)/INCLUDE/FileBuffer.h |
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| 368 | wrap.o: $(ARBHOME)/INCLUDE/smartptr.h |
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| 369 | wrap.o: $(ARBHOME)/INCLUDE/test_global.h |
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