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Last change
on this file was
7187,
checked in by westram, 14 years ago
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merges [7099] [7106] [7107] from refactor
- name+type → FormattedFile
- simplyfied command line parsing and interactive mode
- renamed output-format 'phylip2' to 'fastdnaml'
- fixed broken calls to arb_convert_aln
- raxml and puzzle expect PHYLIP format
- arb_dnarates and arb_fastdnaml expect FASTDNAML format
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-
Property svn:eol-style set to
native
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Property svn:keywords set to
Author Date Id Revision
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File size:
508 bytes
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| 1 | item:TREEPUZZLE ... |
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| 2 | itemmeta: T |
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| 3 | itemmethod:(GOTO_LOCAL_DIR; \ |
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| 4 | arb_convert_aln -GenBank in1 -phylip infile;\ |
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| 5 | RUN_IN_WINDOW((puzzle;$DISPLAY_FUNC));\ |
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| 6 | RM_LOCAL_FILES(in1 outdist) )& |
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| 7 | itemhelp:treepuzzle.help |
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| 8 | |
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| 9 | arg:DISPLAY_FUNC |
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| 10 | argtype:choice_menu |
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| 11 | arglabel:What to do with the tree? |
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| 12 | argchoice:ARB ('tree_puz_//'):arb_read_tree tree_puz_$$ outtree "PRG=PUZZLE FILTER=$FILTER PKG=strimmer/v. haeseler" |
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| 13 | argchoice:Treetool:treetool outtree |
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| 14 | |
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| 15 | in:in1 |
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| 16 | informat:genbank |
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| 17 | inmask: |
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| 18 | insave: |
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| 19 | |
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