source: tags/svn.1.5.4/NTREE/nt_internal.h

Last change on this file was 8313, checked in by westram, 14 years ago
  • removed dead code

(partly reverted by [8316])
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 3.4 KB
Line 
1/* This file is generated by aisc_mkpt.
2 * Any changes you make here will be overwritten later!
3 */
4
5#ifndef NT_INTERNAL_H
6#define NT_INTERNAL_H
7
8/* define ARB attributes: */
9#ifndef ATTRIBUTES_H
10# include <attributes.h>
11#endif
12
13
14/* AP_consensus.cxx */
15
16#ifndef AW_BASE_HXX
17#include <aw_base.hxx>
18#endif
19
20void AP_create_consensus_var(AW_root *aw_root, AW_default aw_def);
21AW_window *AP_open_con_expert_window(AW_root *aw_root);
22AW_window *AP_open_max_freq_window(AW_root *aw_root);
23
24/* AP_cprofile.cxx */
25AW_window *AP_open_cprofile_window(AW_root *aw_root);
26
27/* AP_pos_var_pars.cxx */
28AW_window *AP_open_pos_var_pars_window(AW_root *root);
29
30/* ColumnStat_2_gnuplot.cxx */
31AW_window *NT_create_colstat_2_gnuplot_window(AW_root *root);
32
33/* NT_cb.cxx */
34
35#ifndef ARBDB_BASE_H
36#include <arbdb_base.h>
37#endif
38#ifndef AW_BASE_HXX
39#include <aw_base.hxx>
40#endif
41class AWT_canvas;
42
43void NT_delete_mark_all_cb(void *, AWT_canvas *ntw);
44AW_window *NT_open_select_tree_window(AW_root *awr, char *awar_tree);
45void NT_select_last_tree(AW_window *aww, char *awar_tree);
46AW_window *NT_open_select_alignment_window(AW_root *awr);
47void NT_system_cb(AW_window *aww, AW_CL cl_command, AW_CL cl_auto_help_file);
48void NT_system_in_xterm_cb(AW_window *aww, AW_CL cl_command, AW_CL cl_auto_help_file);
49
50/* NT_concatenate.cxx */
51void NT_createConcatenationAwars(AW_root *aw_root, AW_default aw_def);
52AW_window *NT_createMergeSimilarSpeciesWindow(AW_root *aw_root);
53AW_window *NT_createConcatenationWindow(AW_root *aw_root);
54
55/* NT_dbrepair.cxx */
56GB_ERROR NT_repair_DB(GBDATA *gb_main);
57void NT_rerepair_DB(AW_window *, AW_CL cl_gbmain, AW_CL dummy_1x);
58
59/* NT_edconf.cxx */
60void NT_popup_configuration_admin(AW_window *aw_main, AW_CL dummy_1x, AW_CL dummy_2x);
61AW_window *NT_start_editor_on_old_configuration(AW_root *awr);
62void NT_start_editor_on_tree(AW_window *, AW_CL cl_use_species_aside, AW_CL dummy_1x);
63
64/* NT_import.cxx */
65void NT_import_sequences(AW_window *aww, AW_CL dummy_1x, AW_CL dummy_2x);
66
67/* NT_main.cxx */
68GB_ERROR NT_format_all_alignments(GBDATA *gb_main);
69
70/* NT_sort.cxx */
71void NT_resort_data_by_phylogeny(AW_window *, AW_CL dummy_1x, AW_CL dummy_2x);
72void NT_build_resort_awars(AW_root *awr, AW_default aw_def);
73AW_window *NT_build_resort_window(AW_root *awr);
74
75/* NT_trackAliChanges.cxx */
76void NT_create_trackAliChanges_Awars(AW_root *root, AW_default properties);
77AW_window *NT_create_trackAliChanges_window(AW_root *root);
78
79/* NT_validManual.cxx */
80void NT_createValidNamesAwars(AW_root *aw_root, AW_default aw_def);
81AW_window *NT_searchManuallyNames(AW_root *aw_root);
82
83/* NT_validNames.cxx */
84void NT_deleteValidNames(AW_window *, AW_CL dummy_1x, AW_CL dummy_2x);
85void NT_importValidNames(AW_window *, AW_CL dummy_1x, AW_CL dummy_2x);
86void NT_suggestValidNames(AW_window *, AW_CL dummy_1x, AW_CL dummy_2x);
87
88/* ad_ali.cxx */
89void NT_create_alignment_vars(AW_root *aw_root, AW_default aw_def);
90AW_window *NT_create_alignment_window(AW_root *root, AW_CL popmedown);
91
92/* ad_ext.cxx */
93AW_window *NT_create_extendeds_window(AW_root *aw_root);
94
95/* ad_spec.cxx */
96void NT_count_different_chars(AW_window *, AW_CL cl_gb_main, AW_CL dummy_1x);
97void NT_create_sai_from_pfold(AW_window *aww, AW_CL ntw, AW_CL dummy_1x);
98
99/* ad_transpro.cxx */
100AW_window *NT_create_dna_2_pro_window(AW_root *root);
101AW_window *NT_create_realign_dna_window(AW_root *root);
102void NT_create_transpro_variables(AW_root *root, AW_default db1);
103
104#else
105#error nt_internal.h included twice
106#endif /* NT_INTERNAL_H */
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