source: tags/testbuild

Name Size Rev Age Author Last Change
../
AISC ​ 13079   11 years westram * update from 'trunk' into 'pars' - skipping …
AISC_COM ​ 13193   11 years westram * partial update from 'trunk' into 'pars' * adds: - …
AISC_MKPTPS ​ 13079   11 years westram * update from 'trunk' into 'pars' - skipping …
ARB_GDE ​ 13145   11 years westram * partial update from 'trunk' into 'pars' - skip same as in …
ARBDB ​ 13261   11 years westram * reintegrates 'addtest' into 'pars' * adds: - …
AWT ​ 12939   11 years westram - localize macro id
AWTC ​ 12223   12 years westram * fix: impossible to create a new submission form (name always fell …
AWTI ​ 12427   11 years westram - doc where variable expansion happens (checked code and help) - more …
bin ​ 13193   11 years westram * partial update from 'trunk' into 'pars' * adds: - …
BINDEP ​ 10577   12 years westram - added a bunch of small arb tools into dependency decls
BINDINGS ​ 10998   12 years westram * cflags were completely unused (untested)
BUGEX ​ 7044   15 years westram * fixed include wrappers (merges [7006] [7007]) - use gcc-style …
CONSENSUS_TREE ​ 12014   12 years westram * reintegrates 'fix' into 'trunk' - slightly changes consensus …
CONVERTALN ​ 13079   11 years westram * update from 'trunk' into 'pars' - skipping …
CORE ​ 13145   11 years westram * partial update from 'trunk' into 'pars' - skip same as in …
DBSERVER ​ 11167   12 years westram - leak stuffed
DIST ​ 13145   11 years westram * partial update from 'trunk' into 'pars' - skip same as in …
doc ​ 6141   16 years westram * spellchecked all (phew)
EDIT4 ​ 12848   11 years westram * reintegrates 'fix' into 'trunk' - removes calls to …
EISPACK ​ 10996   12 years westram * use cflags before cxxflags
etc ​ 6141   16 years westram * spellchecked all (phew)
GDE ​ 13081   11 years westram * merge [13080] from 'trunk' into 'pars'
GDEHELP ​ 12931   11 years westram * fix label ('#…' means gfx)
GENOM ​ 13131   11 years westram * partial update from 'trunk' into 'pars' * adds: - …
GENOM_IMPORT ​ 11844   12 years westram * merge [11840:11843] from 'customize' into 'trunk' * adds: - …
GFX ​ 12766   11 years epruesse attempt at building an icon for ARB databases
GL ​ 11805   12 years westram * export 'LINUX' and 'REDHAT' to submakefiles * use ifeq instead of …
HEADERLIBS ​ 7895   14 years westram * added arb_rnacma (correlated mutation analysis) written by Breno …
HELP_SOURCE ​ 13079   11 years westram * update from 'trunk' into 'pars' - skipping …
ISLAND_HOPPING ​ 10997   12 years westram * use cflags before cxxflags (where locally modified)
lib ​ 13079   11 years westram * update from 'trunk' into 'pars' - skipping …
MERGE ​ 12848   11 years westram * reintegrates 'fix' into 'trunk' - removes calls to …
MULTI_PROBE ​ 12884   11 years westram * implements #22 ("expand zombies") - DRYed NT- and …
NALIGNER ​ 11060   12 years westram * reintegrates 'ptsfix' into 'trunk': * adds: - …
NAMES ​ 13079   11 years westram * update from 'trunk' into 'pars' - skipping …
NAMES_COM ​ 12593   11 years westram - update depends for [12591]
NTREE ​ 13145   11 years westram * partial update from 'trunk' into 'pars' - skip same as in …
PARSIMONY ​ 13267   11 years westram * renamed AP_main::push/pop/clear into remember/revert/accept * …
PERL2ARB ​ 13079   11 years westram * update from 'trunk' into 'pars' - skipping …
PERL_SCRIPTS ​ 13079   11 years westram * update from 'trunk' into 'pars' - skipping …
PERLTOOLS ​ 12956   11 years westram * use TEST_COPY_FILE where possible
PHYLO ​ 12757   11 years westram * unify selectionlist creator names * …
PRIMER_DESIGN ​ 12848   11 years westram * reintegrates 'fix' into 'trunk' - removes calls to …
PROBE ​ 13193   11 years westram * partial update from 'trunk' into 'pars' * adds: - …
PROBE_COM ​ 13193   11 years westram * partial update from 'trunk' into 'pars' * adds: - …
PROBE_DESIGN ​ 12884   11 years westram * implements #22 ("expand zombies") - DRYed NT- and …
PROBE_SET ​ 13079   11 years westram * update from 'trunk' into 'pars' - skipping …
ptpan ​ 11060   12 years westram * reintegrates 'ptsfix' into 'trunk': * adds: - …
READSEQ ​ 11805   12 years westram * export 'LINUX' and 'REDHAT' to submakefiles * use ifeq instead of …
RNA3D ​ 12803   11 years westram * merge from 'alilink' into 'trunk' * adds: - …
RNACMA ​ 12478   11 years westram * use gcc features: - use -Og instead of -O0 (gcc4.8++) - …
SECEDIT ​ 12920   11 years westram * abstract AW_at-storage-classes - create via factory - ask …
SEQ_QUALITY ​ 12757   11 years westram * unify selectionlist creator names * …
SERVERCNTRL ​ 12398   11 years westram * GBS_read_arb_tcp() - handle exported errors at callers - …
SH ​ 12794   11 years epruesse SECURITY: arb_launcher sockets and socketdir must have mode 0700 and 0600
SL ​ 13265   11 years westram * fix calloc/delete mismatch
SOURCE_TOOLS ​ 13266   11 years westram * add valgrind leak suppressions for TEST_prot_tree_modifications
STAT ​ 12815   11 years epruesse fix common typos reported by lintian - splitted → split (irregular …
TEMPLATES ​ 13079   11 years westram * update from 'trunk' into 'pars' - skipping …
TOOLS ​ 13193   11 years westram * partial update from 'trunk' into 'pars' * adds: - …
TREEGEN ​ 10996   12 years westram * use cflags before cxxflags
UNIT_TESTER ​ 13261   11 years westram * reintegrates 'addtest' into 'pars' * adds: - …
util ​ 13193   11 years westram * partial update from 'trunk' into 'pars' * adds: - …
WETC ​ 11034   12 years westram * depends for [11033]
WINDOW ​ 12930   11 years westram * sync behavior with gtk - allow gfx-labels before input- and …
XML ​ 12765   11 years epruesse - remove executable flag from xml.[ch]xx
XML_IMPORT ​ 10996   12 years westram * use cflags before cxxflags
arb_CHANGES.txt 17.5 KB ​ 13079   11 years westram * update from 'trunk' into 'pars' - skipping …
arb_install.sh 14.2 KB ​ 11718   12 years westram * reverts [11717] * merge [11714] into trunk (accidentally went into …
arb_INSTALL.txt 4.6 KB ​ 12330   12 years westram - doc installing precompiled versions on debian (tested with wheezy)
arb_LICENSE.txt 10.8 KB ​ 10842   12 years westram * reintegrates 'help' into 'trunk': * adds: - …
arb_OS_X.txt 5.5 KB ​ 12527   11 years westram use readonly svn url
arb_OS_X_MacPorts.txt 370 bytes ​ 6288   16 years westram * include ALL arb_*.txt into release tarball * renamed …
arb_README.txt 7.4 KB ​ 12566   11 years westram * merge some changes from 'stable' back into 'trunk' * adds: - …
arb_UBUNTU.txt 1.3 KB ​ 10420   12 years epruesse - work around linking bug in centos5 - add libreadline-dev to ubuntu …
arbsrc_README.txt 210 bytes ​ 6288   16 years westram * include ALL arb_*.txt into release tarball * renamed …
arbsrc_README_gcc.txt 2.1 KB ​ 7331   15 years westram - tested and added gcc 4.5.2
config.makefile.template 1.8 KB ​ 13079   11 years westram * update from 'trunk' into 'pars' - skipping …
demo.arb 78.9 KB ​ 7664   14 years westram * merge from dev [7509] [7510] [7511] [7514] [7517] [7520] [7524] …
Doxyfile 62.3 KB ​ 11492   12 years westram * fix several doxygen issues (doxygen 1.6.3) - force macro …
Makefile 70.1 KB ​ 13145   11 years westram * partial update from 'trunk' into 'pars' - skip same as in …
README 717 bytes ​ 5390   17 years westram - TAB-Ex
  • Property svn:ignore set to
    *.last_gcc
    ARB_SOURCE_DOC
    ChangeLog
    INCLUDE
    PERL5
    arb.tgz
    arbsrc.lst
    arbsrc_*.tgz
    compile.log
    config.makefile
    do_core
    TAGS
    .cdtproject
    .project
    .settings
    arbsrc.tgz
    *.bak
    arb_time.log
    latest.patch
    patches.arb
    makeloc.here
    interdiff.patch
    white.patch
    latest_iwhite.patch
    nbproject
    fulldiff.patch
    untested.patch
    *.last_compiler
    arb-dev.tgz
  • Property svn:mergeinfo set to (toggle deleted branches)
    /branches/alilink11490-11577,​12419-12666,​12669-12705,​12708-12753,​12801-12802
    /branches/stable12378-12722
    /branches/tree10290-10481,​10500-11400,​11403-11422,​11425-11487,​11556-11559,​12004-12019,​12116-12120
    /trunk12938-12963,​12972,​12977-13191
    /branches/aci10844-11080
    /branches/addtest12468-12472,​13123-13260
    /branches/bpcb10161-10208
    /branches/bpcbold10163-10164,​10180,​10182-10185,​10191-10192
    /branches/bugrep11744-11753
    /branches/cleanup11876-11885
    /branches/cluster12869-12876
    /branches/customize11828-11873,​11913-11947,​11950-11967
    /branches/cxx119320-9515
    /branches/db9626-9836
    /branches/dbcb9731-9739
    /branches/dbui10305-10348
    /branches/deb11801-11814
    /branches/dev7288-7291,​7294-7296,​7824-7828,​7830,​7833-7834,​7837-7838,​7841-7843,​7845-7848,​7876-7877,​7912,​7914,​7938-7939,​7942-7943,​7967,​7969-7970,​7972-7974,​7976-7977,​9506-9507
    /branches/dev_elmar7699-8224
    /branches/dist11501-11512
    /branches/e4fix8134-8632
    /branches/fix11579-11625,​11890-11901,​11904-11910,​11985-11997,​12008-12013,​12023-12042,​12049-12053,​12058-12137,​12147-12156,​12445-12456,​12806-12833,​12839-12847
    /branches/fixMergeinfo9177-9181
    /branches/gcc12076-12079,​12995-13018
    /branches/gtk9379,​9432
    /branches/gtk_only9554,​9698,​9745,​9749,​10108,​12404,​12406,​12408,​12763
    /branches/help10647-10841
    /branches/helptest10585-10720
    /branches/macros9677-9841,​11761-11777,​11780-11797
    /branches/macros29840-10082
    /branches/merge9691-9796
    /branches/nds10485-10493
    /branches/oldrealign12499,​12501,​12537,​12541,​12548,​12595,​12607,​12612,​12616,​12620,​12625,​12628,​12634,​12641
    /branches/pars12894-12900
    /branches/ptsdump8966-9000
    /branches/ptsfix8965-11059
    /branches/ptsstartup9160-9446
    /branches/ptsundef9061-9358
    /branches/rc11679-11696,​11714
    /branches/redev11088-11125
    /branches/sai9504-9632,​9639-11520
    /branches/saiali8634-9188
    /branches/sanitize13023-13076
    /branches/sativa12886-13068
    /branches/slv13152-13190
    /branches/stable_5.08635,​8655,​9163-9164,​9166,​9171
    /branches/treeTests11198-11335
    /branches/xpmfix9770-9776
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