source: trunk/GDE/CLUSTAL/Makefile

Last change on this file was 19446, checked in by westram, 17 months ago
  • introduce onlyC_flags
    • flags used for C compilation only.
    • similar to cxxflags (references added).
    • pass down onlyC_flags into AxML, CLUSTAL, CLUSTALW, FASTDNAML, FASTTREE, GL, MrBAYES, PHYLIP, PHYML*, RAxML, SINA(unused), SOURCE_TOOLS, SUPPORT, TOOLS, TREEGEN + TREEPUZZLE.
    • set flags to -Werror-implicit-function-declaration
      • error is only effective in a small part of these modules.
      • TODO need to activate warnings → will activate the error as well.
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 1.3 KB
Line 
1.SUFFIXES: .o .c .depend
2
3OBJECTS = clustalv.o amenu.o myers.o sequence.o showpair.o \
4          upgma.o util.o trees.o gcgcheck.o
5
6BINARY=$(ARBHOME)/bin/clustalv
7
8$(BINARY) : $(OBJECTS)
9        $(A_CC) $(cflags) $(onlyC_flags) -o $@ $(OBJECTS) -lm
10
11.c.o:
12        $(A_CC) $(cflags) $(onlyC_flags) -c -o $@ $< $(CC_INCLUDES) $(POST_COMPILE) $<
13
14clean:
15        rm -f $(OBJECTS) $(BINARY)
16
17DEPENDS = $(OBJECTS:.o=.depend)
18depends: $(DEPENDS)
19        @cat $(DEPENDS) | grep -v '^#' >>Makefile
20        @rm $(DEPENDS)
21$(DEPENDS): depend.init
22depend.init:
23        $(MAKEDEPEND) $(MAKEDEPENDFLAGS) 2>/dev/null # remove dependencies
24.c.depend:
25        $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@
26
27# DO NOT DELETE THIS LINE -- make depend depends on it.
28
29# Do not add dependencies manually - use 'make depend' in $ARBHOME
30# For formatting issues see SOURCE_TOOLS/fix_depends.pl (from GDE)
31
32amenu.o: clustalv.h
33amenu.o: general.h
34amenu.o: $(ARBHOME)/INCLUDE/gets_noOverflow.h
35
36clustalv.o: clustalv.h
37clustalv.o: general.h
38clustalv.o: matrices.h
39
40myers.o: clustalv.h
41myers.o: general.h
42
43sequence.o: clustalv.h
44sequence.o: general.h
45
46showpair.o: clustalv.h
47showpair.o: general.h
48
49trees.o: clustalv.h
50trees.o: general.h
51
52upgma.o: clustalv.h
53upgma.o: general.h
54
55util.o: clustalv.h
56util.o: general.h
57util.o: $(ARBHOME)/INCLUDE/gets_noOverflow.h
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