|
Last change
on this file was
10835,
checked in by westram, 11 years ago
|
- directly build $ARBHOME/bin/muscle
- fixed problematic subdir generation
- create subdir if needed
- recall make on target
- moved unused source files out of sight
|
|
File size:
865 bytes
|
| Line | |
|---|
| 1 | #include "muscle.h" |
|---|
| 2 | #include "profile.h" |
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| 3 | |
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| 4 | extern SCOREMATRIX VTML_LA; |
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| 5 | extern SCOREMATRIX PAM200; |
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| 6 | extern SCOREMATRIX PAM200NoCenter; |
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| 7 | extern SCOREMATRIX VTML_SP; |
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| 8 | extern SCOREMATRIX VTML_SPNoCenter; |
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| 9 | extern SCOREMATRIX NUC_SP; |
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| 10 | |
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| 11 | PTR_SCOREMATRIX g_ptrScoreMatrix; |
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| 12 | |
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| 13 | void SetScoreMatrix() |
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| 14 | { |
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| 15 | switch (g_PPScore) |
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| 16 | { |
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| 17 | case PPSCORE_LE: |
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| 18 | g_ptrScoreMatrix = &VTML_LA; |
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| 19 | break; |
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| 20 | |
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| 21 | case PPSCORE_SP: |
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| 22 | if (g_bPrecompiledCenter) |
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| 23 | g_ptrScoreMatrix = &PAM200; |
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| 24 | else |
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| 25 | g_ptrScoreMatrix = &PAM200NoCenter; |
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| 26 | break; |
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| 27 | |
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| 28 | case PPSCORE_SV: |
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| 29 | if (g_bPrecompiledCenter) |
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| 30 | g_ptrScoreMatrix = &VTML_SP; |
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| 31 | else |
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| 32 | g_ptrScoreMatrix = &VTML_SPNoCenter; |
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| 33 | break; |
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| 34 | |
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| 35 | case PPSCORE_SPN: |
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| 36 | if (g_bPrecompiledCenter) |
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| 37 | g_ptrScoreMatrix = &NUC_SP; |
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| 38 | else |
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| 39 | Quit("SPN requires precompiled center"); |
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| 40 | break; |
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| 41 | |
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| 42 | default: |
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| 43 | Quit("Invalid g_PPScore"); |
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| 44 | } |
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| 45 | } |
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