Last change
on this file was
19446,
checked in by westram, 17 months ago
|
- introduce onlyC_flags
- flags used for C compilation only.
- similar to cxxflags (references added).
- pass down onlyC_flags into AxML, CLUSTAL, CLUSTALW, FASTDNAML, FASTTREE, GL, MrBAYES, PHYLIP, PHYML*, RAxML, SINA(unused), SOURCE_TOOLS, SUPPORT, TOOLS, TREEGEN + TREEPUZZLE.
- set flags to -Werror-implicit-function-declaration
- error is only effective in a small part of these modules.
- need to activate warnings → will activate the error as well.
|
File size:
1.2 KB
|
Line | |
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1 | # MrBayes Makefile for ARB |
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2 | # by Arne Boeckmann (2013) |
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3 | |
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4 | PROG = MrBAYES |
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5 | SUB = mrbayes_3.2.1 |
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6 | FOLDER =$(ARBHOME)/GDE/MrBAYES/$(SUB) |
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7 | |
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8 | LOCBIN=$(FOLDER)/mb |
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9 | LOCDEPS=$(FOLDER)/Makefile $(wildcard $(FOLDER)/*.c) $(wildcard $(FOLDER)/*.h) |
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10 | |
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11 | INSTBIN=$(ARBHOME)/bin/mb |
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12 | |
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13 | CC:=$(A_CC) $(onlyC_flags) |
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14 | CXX:=$(A_CXX) |
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15 | |
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16 | # ARBs standard target |
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17 | $(MAIN) : $(INSTBIN) |
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18 | |
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19 | clean : |
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20 | rm -f $(INSTBIN) |
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21 | cd $(FOLDER) && $(MAKE) clean |
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22 | |
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23 | $(INSTBIN) : $(LOCBIN) |
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24 | cp $(LOCBIN) $(INSTBIN) |
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25 | |
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26 | $(LOCBIN): $(LOCDEPS) |
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27 | +cd $(FOLDER) && $(MAKE) mb |
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28 | |
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29 | depends: $(SUB)/$(SUB).depend |
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30 | |
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31 | %.depend: |
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32 | @cp -p $(@D)/Makefile $(@D)/Makefile.old # save old Makefile |
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33 | @$(MAKE) -C $(@D) -r depends |
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34 | @grep "^# DO NOT DELETE" $(@D)/Makefile >/dev/null || \ |
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35 | (echo "$(@D)/Makefile:666: Error: No dependencies in $(@D)/Makefile"; false) # check whether sub Makefile has dependencies |
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36 | @$(ARBHOME)/SOURCE_TOOLS/fix_depends.pl "(from GDE/MrBayes)" < $(@D)/Makefile > $(@D)/Makefile.2 |
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37 | @mv $(@D)/Makefile.old $(@D)/Makefile # restore old Makefile |
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38 | @$(ARBHOME)/SOURCE_TOOLS/mv_if_diff $(@D)/Makefile.2 $(@D)/Makefile # update Makefile if changed |
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39 | |
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40 | .PHONY : clean depends |
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41 | |
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42 | # DO NOT DELETE |
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43 | |
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44 | # Do not add dependencies manually - use 'make depend' in $ARBHOME |
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45 | # For formatting issues see SOURCE_TOOLS/fix_depends.pl (from GDE) |
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