| Line | |
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| 1 | void BeaglePrintResources(void); |
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| 2 | void BeaglePrintFlags(long inFlags); |
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| 3 | void BeagleNotLinked(void); |
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| 4 | void BeagleThreadsNotLinked(void); |
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| 5 | int BeagleCheckFlagCompatability(long inFlags); |
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| 6 | void BeagleAddGPUDevicesToList(int **beagleResource, int *beagleResourceCount); |
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| 7 | void BeagleRemoveGPUDevicesFromList(int **beagleResource, int *beagleResourceCount); |
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| 8 | int ScheduleLogLikeForAllDivisions(void); |
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| 9 | |
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| 10 | void LaunchBEAGLELogLikeForDivision(int chain, int d, ModelInfo* m, Tree* tree, MrBFlt* lnL); |
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| 11 | void *LaunchThreadLogLikeForDivision(void *arguments); |
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| 12 | MrBFlt LaunchLogLikeForAllDivisionsInParallel(int chain); |
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| 13 | void recalculateScalers(int chain ); |
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| 14 | |
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| 15 | int InitBeagleInstance (ModelInfo *m, int division); |
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| 16 | |
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| 17 | int TreeCondLikes_Beagle (Tree *t, int division, int chain); |
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| 18 | int TreeLikelihood_Beagle (Tree *t, int division, int chain, MrBFlt *lnL, int whichSitePats); |
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| 19 | int TreeTiProbs_Beagle (Tree *t, int division, int chain); |
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