|
Last change
on this file was
19446,
checked in by westram, 17 months ago
|
- introduce onlyC_flags
- flags used for C compilation only.
- similar to cxxflags (references added).
- pass down onlyC_flags into AxML, CLUSTAL, CLUSTALW, FASTDNAML, FASTTREE, GL, MrBAYES, PHYLIP, PHYML*, RAxML, SINA(unused), SOURCE_TOOLS, SUPPORT, TOOLS, TREEGEN + TREEPUZZLE.
- set flags to -Werror-implicit-function-declaration
- error is only effective in a small part of these modules.
- need to activate warnings → will activate the error as well.
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
2.2 KB
|
| Line | |
|---|
| 1 | # PHYML 2.4.5 Makefile |
|---|
| 2 | # modified for ARB by Ralf Westram (Jun 2006) |
|---|
| 3 | |
|---|
| 4 | .SUFFIXES: .o .c .h .depend |
|---|
| 5 | |
|---|
| 6 | LIBS = -lm |
|---|
| 7 | PROG = PHYML |
|---|
| 8 | DFLAG = -DUNIX -D$(PROG) |
|---|
| 9 | OBJS = main.o utilities.o optimiz.o lk.o bionj.o models.o free.o options.o simu.o eigen.o |
|---|
| 10 | |
|---|
| 11 | ifndef ARB |
|---|
| 12 | # ---------------------------------------- |
|---|
| 13 | # original compilation |
|---|
| 14 | |
|---|
| 15 | CC = gcc #cc |
|---|
| 16 | CFLAGS = -O4 -fomit-frame-pointer -Wall |
|---|
| 17 | # CFLAGS = -Wall |
|---|
| 18 | # CFLAGS = -g -Wall |
|---|
| 19 | # CFLAGS = -pg -Wall -fprofile-arcs -static |
|---|
| 20 | |
|---|
| 21 | EXEC = phyml |
|---|
| 22 | |
|---|
| 23 | else |
|---|
| 24 | # ---------------------------------------- |
|---|
| 25 | # compilation together with ARB |
|---|
| 26 | |
|---|
| 27 | CC = $(A_CC) |
|---|
| 28 | CFLAGS = $(cflags) $(onlyC_flags) -fomit-frame-pointer |
|---|
| 29 | EXEC = $(ARBHOME)/bin/phyml |
|---|
| 30 | |
|---|
| 31 | ifeq ($(DARWIN),1) |
|---|
| 32 | CFLAGS += -fPIC |
|---|
| 33 | endif |
|---|
| 34 | |
|---|
| 35 | # ARBs standard target |
|---|
| 36 | $(MAIN) : $(EXEC) |
|---|
| 37 | |
|---|
| 38 | endif |
|---|
| 39 | |
|---|
| 40 | $(EXEC) : $(OBJS) |
|---|
| 41 | $(CC) -o $(EXEC) $(OBJS) $(LIBS) $(CFLAGS) |
|---|
| 42 | |
|---|
| 43 | clean : |
|---|
| 44 | rm -f $(OBJS) $(EXEC) |
|---|
| 45 | |
|---|
| 46 | .c.o: |
|---|
| 47 | $(CC) $(CFLAGS) $(DFLAG) -c -o $@ $< |
|---|
| 48 | |
|---|
| 49 | ###################################################################################################### |
|---|
| 50 | |
|---|
| 51 | DEPENDS = $(OBJS:.o=.depend) |
|---|
| 52 | depends: $(DEPENDS) |
|---|
| 53 | @cat $(DEPENDS) | grep -v '^#' >>Makefile |
|---|
| 54 | @rm $(DEPENDS) |
|---|
| 55 | $(DEPENDS): depend.init |
|---|
| 56 | depend.init: |
|---|
| 57 | $(MAKEDEPEND) $(MAKEDEPENDFLAGS) 2>/dev/null # remove dependencies |
|---|
| 58 | .c.depend: |
|---|
| 59 | $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@ |
|---|
| 60 | |
|---|
| 61 | # DO NOT DELETE |
|---|
| 62 | |
|---|
| 63 | # Do not add dependencies manually - use 'make depend' in $ARBHOME |
|---|
| 64 | # For formatting issues see SOURCE_TOOLS/fix_depends.pl (from GDE) |
|---|
| 65 | |
|---|
| 66 | bionj.o: bionj.h |
|---|
| 67 | bionj.o: optimiz.h |
|---|
| 68 | bionj.o: utilities.h |
|---|
| 69 | |
|---|
| 70 | eigen.o: eigen.h |
|---|
| 71 | eigen.o: utilities.h |
|---|
| 72 | |
|---|
| 73 | free.o: free.h |
|---|
| 74 | free.o: utilities.h |
|---|
| 75 | |
|---|
| 76 | lk.o: free.h |
|---|
| 77 | lk.o: lk.h |
|---|
| 78 | lk.o: models.h |
|---|
| 79 | lk.o: optimiz.h |
|---|
| 80 | lk.o: utilities.h |
|---|
| 81 | |
|---|
| 82 | main.o: bionj.h |
|---|
| 83 | main.o: free.h |
|---|
| 84 | main.o: lk.h |
|---|
| 85 | main.o: models.h |
|---|
| 86 | main.o: optimiz.h |
|---|
| 87 | main.o: options.h |
|---|
| 88 | main.o: simu.h |
|---|
| 89 | main.o: utilities.h |
|---|
| 90 | |
|---|
| 91 | models.o: eigen.h |
|---|
| 92 | models.o: free.h |
|---|
| 93 | models.o: models.h |
|---|
| 94 | models.o: utilities.h |
|---|
| 95 | |
|---|
| 96 | optimiz.o: free.h |
|---|
| 97 | optimiz.o: lk.h |
|---|
| 98 | optimiz.o: optimiz.h |
|---|
| 99 | optimiz.o: utilities.h |
|---|
| 100 | |
|---|
| 101 | options.o: free.h |
|---|
| 102 | options.o: models.h |
|---|
| 103 | options.o: options.h |
|---|
| 104 | options.o: utilities.h |
|---|
| 105 | |
|---|
| 106 | simu.o: free.h |
|---|
| 107 | simu.o: lk.h |
|---|
| 108 | simu.o: models.h |
|---|
| 109 | simu.o: optimiz.h |
|---|
| 110 | simu.o: simu.h |
|---|
| 111 | simu.o: utilities.h |
|---|
| 112 | |
|---|
| 113 | utilities.o: bionj.h |
|---|
| 114 | utilities.o: free.h |
|---|
| 115 | utilities.o: lk.h |
|---|
| 116 | utilities.o: models.h |
|---|
| 117 | utilities.o: optimiz.h |
|---|
| 118 | utilities.o: simu.h |
|---|
| 119 | utilities.o: utilities.h |
|---|
Note: See
TracBrowser
for help on using the repository browser.
