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Last change
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19480,
checked in by westram, 17 months ago
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File size:
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| 1 | /* |
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| 2 | |
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| 3 | PHYML : a program that computes maximum likelihood phylogenies from |
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| 4 | DNA or AA homologous sequences |
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| 5 | |
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| 6 | Copyright (C) Stephane Guindon. Oct 2003 onward |
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| 7 | |
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| 8 | All parts of the source except where indicated are distributed under |
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| 9 | the GNU public licence. See http://www.opensource.org for details. |
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| 10 | |
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| 11 | */ |
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| 12 | |
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| 13 | #ifndef CURR_H |
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| 14 | #define CURR_H |
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| 15 | |
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| 16 | void Simu(arbre *tree,int n_step_max); |
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| 17 | void Select_Edges_To_Swap(arbre *tree,edge **sorted_b,int *n_neg); |
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| 18 | void Fix_All(arbre *tree); |
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| 19 | void Update_Bl(arbre *tree,double fact); |
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| 20 | void Make_N_Swap(arbre *tree,edge **b,int beg,int end); |
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| 21 | int Make_Best_Swap(arbre *tree); |
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| 22 | int Mov_Backward_Topo_Bl(arbre *tree,double lk_old,edge **tested_b,int n_tested); |
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| 23 | void Unswap_N_Branch(edge **b,int beg,int end); |
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| 24 | void Swap_N_Branch(edge **b,int beg,int end); |
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| 25 | |
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| 26 | #endif |
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