| Line | |
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| 1 | # EXTRA_DIST = doc bin examples |
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| 2 | |
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| 3 | DEFS = $(REVISION) |
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| 4 | |
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| 5 | if WANT_PHYTIME |
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| 6 | bin_PROGRAMS = phytime |
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| 7 | PROG = PHYTIME |
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| 8 | else |
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| 9 | if WANT_PHYCONT |
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| 10 | bin_PROGRAMS = phycont |
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| 11 | PROG = PHYCONT |
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| 12 | else |
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| 13 | if WANT_PART |
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| 14 | bin_PROGRAMS = part |
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| 15 | PROG = PART |
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| 16 | else |
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| 17 | if WANT_RWRAP |
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| 18 | PROG = RWRAP |
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| 19 | else |
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| 20 | if WANT_TIPORDER |
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| 21 | bin_PROGRAMS = tiporder |
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| 22 | PROG = TIPORDER |
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| 23 | else |
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| 24 | if WANT_M4 |
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| 25 | bin_PROGRAMS = m4 |
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| 26 | PROG = M4 |
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| 27 | else |
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| 28 | if WANT_RF |
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| 29 | bin_PROGRAMS = rf |
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| 30 | PROG = RF |
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| 31 | else |
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| 32 | if WANT_MPI |
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| 33 | bin_PROGRAMS = phyml-mpi |
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| 34 | PROG = PHYML |
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| 35 | else |
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| 36 | if WANT_TEST |
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| 37 | bin_PROGRAMS = test |
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| 38 | PROG = TEST |
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| 39 | else |
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| 40 | if WANT_SERGEII |
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| 41 | bin_PROGRAMS = sergeii |
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| 42 | PROG = SERGEII |
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| 43 | else |
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| 44 | if WANT_GEO |
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| 45 | bin_PROGRAMS = geo |
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| 46 | PROG = GEO |
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| 47 | else |
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| 48 | if WANT_EVOLVE |
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| 49 | bin_PROGRAMS = evolve |
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| 50 | PROG = EVOLVE |
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| 51 | else |
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| 52 | if WANT_CHECKPOINT |
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| 53 | bin_PROGRAMS = checkpoint |
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| 54 | PROG = CHECKPOINT |
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| 55 | else |
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| 56 | bin_PROGRAMS = phyml |
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| 57 | PROG = PHYML |
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| 58 | endif |
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| 59 | endif |
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| 60 | endif |
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| 61 | endif |
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| 62 | endif |
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| 63 | endif |
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| 64 | endif |
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| 65 | endif |
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| 66 | endif |
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| 67 | endif |
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| 68 | endif |
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| 69 | endif |
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| 70 | endif |
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| 71 | |
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| 72 | if WANT_PHYTIME |
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| 73 | phytime_SOURCES = main.c \ |
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| 74 | utilities.c utilities.h\ |
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| 75 | optimiz.c optimiz.h\ |
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| 76 | lk.c lk.h\ |
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| 77 | bionj.c bionj.h\ |
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| 78 | models.c models.h\ |
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| 79 | free.c free.h\ |
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| 80 | help.c help.h\ |
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| 81 | simu.c simu.h\ |
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| 82 | eigen.c eigen.h\ |
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| 83 | pars.c pars.h\ |
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| 84 | alrt.c alrt.h\ |
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| 85 | interface.c interface.h\ |
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| 86 | cl.c cl.h\ |
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| 87 | spr.c spr.h\ |
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| 88 | times.c times.h\ |
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| 89 | m4.c m4.h\ |
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| 90 | draw.c draw.h\ |
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| 91 | rates.c rates.h\ |
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| 92 | mcmc.c mcmc.h\ |
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| 93 | stats.c stats.h\ |
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| 94 | mg.c mg.h\ |
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| 95 | tiporder.c tiporder.h\ |
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| 96 | io.c io.h\ |
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| 97 | make.c make.h\ |
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| 98 | mixt.c mixt.h\ |
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| 99 | init.c init.h\ |
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| 100 | nexus.c nexus.h\ |
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| 101 | sergeii.c sergeii.h\ |
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| 102 | xml.c xml.h |
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| 103 | phytime_LDADD = -lm |
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| 104 | else |
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| 105 | if WANT_PHYCONT |
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| 106 | phycont_SOURCES = main.c \ |
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| 107 | utilities.c utilities.h\ |
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| 108 | optimiz.c optimiz.h\ |
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| 109 | lk.c lk.h\ |
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| 110 | bionj.c bionj.h\ |
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| 111 | models.c models.h\ |
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| 112 | free.c free.h\ |
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| 113 | help.c help.h\ |
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| 114 | simu.c simu.h\ |
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| 115 | eigen.c eigen.h\ |
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| 116 | pars.c pars.h\ |
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| 117 | alrt.c alrt.h\ |
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| 118 | interface.c interface.h\ |
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| 119 | cl.c cl.h\ |
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| 120 | spr.c spr.h\ |
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| 121 | times.c times.h\ |
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| 122 | m4.c m4.h\ |
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| 123 | draw.c draw.h\ |
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| 124 | rates.c rates.h\ |
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| 125 | mcmc.c mcmc.h\ |
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| 126 | stats.c stats.h\ |
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| 127 | mg.c mg.h\ |
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| 128 | tiporder.c tiporder.h |
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| 129 | # continuous.c continuous.h |
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| 130 | phycont_LDADD = -lm |
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| 131 | else |
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| 132 | # if WANT_RWRAP |
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| 133 | # lib_LTLIBRARIES = librwrap.la |
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| 134 | # librwrap_la_SOURCES = main.c \ |
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| 135 | # utilities.c utilities.h\ |
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| 136 | # optimiz.c optimiz.h\ |
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| 137 | # lk.c lk.h\ |
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| 138 | # bionj.c bionj.h\ |
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| 139 | # models.c models.h\ |
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| 140 | # free.c free.h\ |
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| 141 | # help.c help.h\ |
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| 142 | # simu.c simu.h\ |
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| 143 | # eigen.c eigen.h\ |
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| 144 | # pars.c pars.h\ |
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| 145 | # alrt.c alrt.h\ |
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| 146 | # interface.c interface.h\ |
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| 147 | # cl.c cl.h\ |
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| 148 | # mg.c mg.h\ |
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| 149 | # spr.c spr.h\ |
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| 150 | # m4.c m4.h\ |
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| 151 | # draw.c draw.h\ |
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| 152 | # mcmc.c mcmc.h\ |
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| 153 | # stats.c stats.h\ |
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| 154 | # times.c times.h\ |
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| 155 | # tiporder.c tiporder.h\ |
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| 156 | # rates.c rates.h\ |
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| 157 | # rwrapper.c rwrapper.h |
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| 158 | # librwrap_la_LIBADD = -lm |
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| 159 | # librwrap_la_LDFLAGS = -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -flat_namespace -undefined suppress -shared -module |
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| 160 | # librwrap_la_CFLAGS=-std=gnu99 -fPIC |
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| 161 | # else |
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| 162 | if WANT_PART |
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| 163 | part_SOURCES = main.c \ |
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| 164 | utilities.c utilities.h\ |
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| 165 | optimiz.c optimiz.h\ |
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| 166 | lk.c lk.h\ |
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| 167 | bionj.c bionj.h\ |
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| 168 | models.c models.h\ |
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| 169 | free.c free.h\ |
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| 170 | help.c help.h\ |
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| 171 | simu.c simu.h\ |
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| 172 | eigen.c eigen.h\ |
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| 173 | pars.c pars.h\ |
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| 174 | alrt.c alrt.h\ |
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| 175 | interface.c interface.h\ |
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| 176 | cl.c cl.h\ |
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| 177 | mg.c mg.h\ |
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| 178 | spr.c spr.h\ |
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| 179 | m4.c m4.h\ |
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| 180 | draw.c draw.h\ |
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| 181 | stats.c stats.h\ |
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| 182 | tiporder.c tiporder.h |
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| 183 | part_LDADD = -lm |
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| 184 | else |
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| 185 | if WANT_TIPORDER |
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| 186 | tiporder_SOURCES = main.c \ |
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| 187 | utilities.c utilities.h\ |
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| 188 | optimiz.c optimiz.h\ |
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| 189 | lk.c lk.h\ |
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| 190 | bionj.c bionj.h\ |
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| 191 | models.c models.h\ |
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| 192 | free.c free.h\ |
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| 193 | help.c help.h\ |
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| 194 | simu.c simu.h\ |
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| 195 | eigen.c eigen.h\ |
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| 196 | pars.c pars.h\ |
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| 197 | alrt.c alrt.h\ |
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| 198 | interface.c interface.h\ |
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| 199 | cl.c cl.h\ |
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| 200 | mg.c mg.h\ |
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| 201 | times.c times.h\ |
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| 202 | mcmc.c mcmc.h\ |
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| 203 | rates.c rates.h\ |
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| 204 | spr.c spr.h\ |
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| 205 | m4.c m4.h\ |
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| 206 | draw.c draw.h\ |
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| 207 | stats.c stats.h\ |
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| 208 | tiporder.c tiporder.h |
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| 209 | tiporder_LDADD = -lm |
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| 210 | else |
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| 211 | if WANT_M4 |
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| 212 | m4_SOURCES = main.c \ |
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| 213 | utilities.c utilities.h\ |
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| 214 | optimiz.c optimiz.h\ |
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| 215 | lk.c lk.h\ |
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| 216 | bionj.c bionj.h\ |
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| 217 | models.c models.h\ |
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| 218 | free.c free.h\ |
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| 219 | help.c help.h\ |
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| 220 | simu.c simu.h\ |
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| 221 | eigen.c eigen.h\ |
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| 222 | pars.c pars.h\ |
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| 223 | alrt.c alrt.h\ |
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| 224 | interface.c interface.h\ |
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| 225 | cl.c cl.h\ |
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| 226 | mg.c mg.h\ |
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| 227 | times.c times.h\ |
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| 228 | mcmc.c mcmc.h\ |
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| 229 | rates.c rates.h\ |
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| 230 | spr.c spr.h\ |
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| 231 | draw.c draw.h\ |
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| 232 | stats.c stats.h\ |
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| 233 | tiporder.c tiporder.h\ |
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| 234 | m4.c m4.h |
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| 235 | m4_LDADD = -lm |
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| 236 | else |
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| 237 | if WANT_RF |
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| 238 | rf_SOURCES = main.c \ |
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| 239 | utilities.c utilities.h\ |
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| 240 | optimiz.c optimiz.h\ |
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| 241 | lk.c lk.h\ |
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| 242 | bionj.c bionj.h\ |
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| 243 | models.c models.h\ |
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| 244 | free.c free.h\ |
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| 245 | help.c help.h\ |
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| 246 | simu.c simu.h\ |
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| 247 | eigen.c eigen.h\ |
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| 248 | pars.c pars.h\ |
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| 249 | alrt.c alrt.h\ |
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| 250 | interface.c interface.h\ |
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| 251 | cl.c cl.h\ |
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| 252 | mg.c mg.h\ |
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| 253 | times.c times.h\ |
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| 254 | mcmc.c mcmc.h\ |
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| 255 | rates.c rates.h\ |
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| 256 | spr.c spr.h\ |
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| 257 | draw.c draw.h\ |
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| 258 | stats.c stats.h\ |
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| 259 | tiporder.c tiporder.h\ |
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| 260 | m4.c m4.h |
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| 261 | rf_LDADD = -lm |
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| 262 | else |
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| 263 | if WANT_MPI |
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| 264 | phyml_mpi_SOURCES = main.c \ |
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| 265 | utilities.c utilities.h\ |
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| 266 | optimiz.c optimiz.h\ |
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| 267 | lk.c lk.h\ |
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| 268 | bionj.c bionj.h\ |
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| 269 | models.c models.h\ |
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| 270 | free.c free.h\ |
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| 271 | help.c help.h\ |
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| 272 | simu.c simu.h\ |
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| 273 | eigen.c eigen.h\ |
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| 274 | pars.c pars.h\ |
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| 275 | alrt.c alrt.h\ |
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| 276 | interface.c interface.h\ |
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| 277 | cl.c cl.h\ |
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| 278 | spr.c spr.h\ |
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| 279 | draw.c draw.h\ |
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| 280 | stats.c stats.h\ |
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| 281 | rates.c rates.h\ |
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| 282 | mcmc.c mcmc.h\ |
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| 283 | times.c times.h\ |
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| 284 | tiporder.c tiporder.h\ |
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| 285 | mg.c mg.h\ |
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| 286 | m4.c m4.h\ |
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| 287 | io.c io.h\ |
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| 288 | make.c make.h\ |
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| 289 | nexus.c nexus.h\ |
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| 290 | init.c init.h\ |
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| 291 | xml.c xml.h\ |
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| 292 | sergeii.c sergeii.h\ |
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| 293 | mixt.c mixt.h\ |
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| 294 | mpi_boot.c mpi_boot.h |
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| 295 | phyml_mpi_LDADD = -lm |
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| 296 | else |
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| 297 | if WANT_TEST |
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| 298 | test_SOURCES = main.c \ |
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| 299 | utilities.c utilities.h\ |
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| 300 | optimiz.c optimiz.h\ |
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| 301 | lk.c lk.h\ |
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| 302 | bionj.c bionj.h\ |
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| 303 | models.c models.h\ |
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| 304 | free.c free.h\ |
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| 305 | help.c help.h\ |
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| 306 | simu.c simu.h\ |
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| 307 | eigen.c eigen.h\ |
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| 308 | pars.c pars.h\ |
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| 309 | alrt.c alrt.h\ |
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| 310 | interface.c interface.h\ |
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| 311 | cl.c cl.h\ |
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| 312 | spr.c spr.h\ |
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| 313 | draw.c draw.h\ |
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| 314 | stats.c stats.h\ |
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| 315 | rates.c rates.h\ |
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| 316 | mcmc.c mcmc.h\ |
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| 317 | times.c times.h\ |
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| 318 | tiporder.c tiporder.h\ |
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| 319 | mg.c mg.h\ |
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| 320 | m4.c m4.h\ |
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| 321 | io.c io.h\ |
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| 322 | make.c make.h\ |
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| 323 | nexus.c nexus.h\ |
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| 324 | init.c init.h\ |
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| 325 | xml.c xml.h\ |
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| 326 | mixt.c mixt.h |
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| 327 | test_LDADD = -lm |
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| 328 | else |
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| 329 | if WANT_SERGEII |
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| 330 | sergeii_SOURCES = main.c \ |
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| 331 | utilities.c utilities.h\ |
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| 332 | optimiz.c optimiz.h\ |
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| 333 | lk.c lk.h\ |
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| 334 | bionj.c bionj.h\ |
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| 335 | models.c models.h\ |
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| 336 | free.c free.h\ |
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| 337 | help.c help.h\ |
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| 338 | simu.c simu.h\ |
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| 339 | eigen.c eigen.h\ |
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| 340 | pars.c pars.h\ |
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| 341 | alrt.c alrt.h\ |
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| 342 | interface.c interface.h\ |
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| 343 | cl.c cl.h\ |
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| 344 | spr.c spr.h\ |
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| 345 | draw.c draw.h\ |
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| 346 | stats.c stats.h\ |
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| 347 | rates.c rates.h\ |
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| 348 | mcmc.c mcmc.h\ |
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| 349 | times.c times.h\ |
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| 350 | tiporder.c tiporder.h\ |
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| 351 | mg.c mg.h\ |
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| 352 | m4.c m4.h\ |
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| 353 | io.c io.h\ |
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| 354 | make.c make.h\ |
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| 355 | nexus.c nexus.h\ |
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| 356 | init.c init.h\ |
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| 357 | xml.c xml.h\ |
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| 358 | sergeii.c sergeii.h\ |
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| 359 | mixt.c mixt.h |
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| 360 | sergeii_LDADD = -lm |
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| 361 | else |
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| 362 | if WANT_EVOLVE |
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| 363 | evolve_SOURCES = main.c\ |
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| 364 | utilities.c utilities.h\ |
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| 365 | optimiz.c optimiz.h\ |
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| 366 | lk.c lk.h\ |
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| 367 | bionj.c bionj.h\ |
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| 368 | models.c models.h\ |
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| 369 | free.c free.h\ |
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| 370 | help.c help.h\ |
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| 371 | simu.c simu.h\ |
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| 372 | eigen.c eigen.h\ |
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| 373 | pars.c pars.h\ |
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| 374 | alrt.c alrt.h\ |
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| 375 | interface.c interface.h\ |
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| 376 | cl.c cl.h\ |
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| 377 | spr.c spr.h\ |
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| 378 | draw.c draw.h\ |
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| 379 | stats.c stats.h\ |
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| 380 | rates.c rates.h\ |
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| 381 | mcmc.c mcmc.h\ |
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| 382 | times.c times.h\ |
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| 383 | tiporder.c tiporder.h\ |
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| 384 | mg.c mg.h\ |
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| 385 | m4.c m4.h\ |
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| 386 | io.c io.h\ |
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| 387 | make.c make.h\ |
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| 388 | nexus.c nexus.h\ |
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| 389 | init.c init.h\ |
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| 390 | xml.c xml.h\ |
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| 391 | sergeii.c sergeii.h\ |
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| 392 | mixt.c mixt.h |
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| 393 | evolve_LDADD = -lm |
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| 394 | else |
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| 395 | if WANT_GEO |
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| 396 | geo_SOURCES = main.c\ |
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| 397 | utilities.c utilities.h\ |
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| 398 | optimiz.c optimiz.h\ |
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| 399 | lk.c lk.h\ |
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| 400 | bionj.c bionj.h\ |
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| 401 | models.c models.h\ |
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| 402 | free.c free.h\ |
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| 403 | help.c help.h\ |
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| 404 | simu.c simu.h\ |
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| 405 | eigen.c eigen.h\ |
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| 406 | pars.c pars.h\ |
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| 407 | alrt.c alrt.h\ |
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| 408 | interface.c interface.h\ |
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| 409 | cl.c cl.h\ |
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| 410 | spr.c spr.h\ |
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| 411 | draw.c draw.h\ |
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| 412 | stats.c stats.h\ |
|---|
| 413 | rates.c rates.h\ |
|---|
| 414 | mcmc.c mcmc.h\ |
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| 415 | times.c times.h\ |
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| 416 | tiporder.c tiporder.h\ |
|---|
| 417 | mg.c mg.h\ |
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| 418 | m4.c m4.h\ |
|---|
| 419 | io.c io.h\ |
|---|
| 420 | make.c make.h\ |
|---|
| 421 | nexus.c nexus.h\ |
|---|
| 422 | init.c init.h\ |
|---|
| 423 | xml.c xml.h\ |
|---|
| 424 | sergeii.c sergeii.h\ |
|---|
| 425 | mixt.c mixt.h\ |
|---|
| 426 | geo.c geo.h |
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| 427 | geo_LDADD = -lm |
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| 428 | else |
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| 429 | if WANT_CHECKPOINT |
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| 430 | checkpoint_SOURCES = main.c\ |
|---|
| 431 | utilities.c utilities.h\ |
|---|
| 432 | optimiz.c optimiz.h\ |
|---|
| 433 | lk.c lk.h\ |
|---|
| 434 | bionj.c bionj.h\ |
|---|
| 435 | models.c models.h\ |
|---|
| 436 | free.c free.h\ |
|---|
| 437 | help.c help.h\ |
|---|
| 438 | simu.c simu.h\ |
|---|
| 439 | eigen.c eigen.h\ |
|---|
| 440 | pars.c pars.h\ |
|---|
| 441 | alrt.c alrt.h\ |
|---|
| 442 | interface.c interface.h\ |
|---|
| 443 | cl.c cl.h\ |
|---|
| 444 | spr.c spr.h\ |
|---|
| 445 | draw.c draw.h\ |
|---|
| 446 | stats.c stats.h\ |
|---|
| 447 | rates.c rates.h\ |
|---|
| 448 | mcmc.c mcmc.h\ |
|---|
| 449 | times.c times.h\ |
|---|
| 450 | tiporder.c tiporder.h\ |
|---|
| 451 | mg.c mg.h\ |
|---|
| 452 | m4.c m4.h\ |
|---|
| 453 | io.c io.h\ |
|---|
| 454 | make.c make.h\ |
|---|
| 455 | nexus.c nexus.h\ |
|---|
| 456 | init.c init.h\ |
|---|
| 457 | xml.c xml.h\ |
|---|
| 458 | sergeii.c sergeii.h\ |
|---|
| 459 | mixt.c mixt.h\ |
|---|
| 460 | checkpoint.c checkpoint.h |
|---|
| 461 | checkpoint_LDADD = -lm |
|---|
| 462 | else |
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| 463 | phyml_SOURCES = main.c \ |
|---|
| 464 | utilities.c utilities.h\ |
|---|
| 465 | optimiz.c optimiz.h\ |
|---|
| 466 | lk.c lk.h\ |
|---|
| 467 | bionj.c bionj.h\ |
|---|
| 468 | models.c models.h\ |
|---|
| 469 | free.c free.h\ |
|---|
| 470 | help.c help.h\ |
|---|
| 471 | simu.c simu.h\ |
|---|
| 472 | eigen.c eigen.h\ |
|---|
| 473 | pars.c pars.h\ |
|---|
| 474 | alrt.c alrt.h\ |
|---|
| 475 | interface.c interface.h\ |
|---|
| 476 | cl.c cl.h\ |
|---|
| 477 | spr.c spr.h\ |
|---|
| 478 | draw.c draw.h\ |
|---|
| 479 | stats.c stats.h\ |
|---|
| 480 | rates.c rates.h\ |
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| 481 | mcmc.c mcmc.h\ |
|---|
| 482 | times.c times.h\ |
|---|
| 483 | tiporder.c tiporder.h\ |
|---|
| 484 | mg.c mg.h\ |
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| 485 | m4.c m4.h\ |
|---|
| 486 | io.c io.h\ |
|---|
| 487 | make.c make.h\ |
|---|
| 488 | nexus.c nexus.h\ |
|---|
| 489 | init.c init.h\ |
|---|
| 490 | xml.c xml.h\ |
|---|
| 491 | sergeii.c sergeii.h\ |
|---|
| 492 | mixt.c mixt.h |
|---|
| 493 | phyml_LDADD = -lm |
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| 494 | endif |
|---|
| 495 | endif |
|---|
| 496 | endif |
|---|
| 497 | endif |
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| 498 | endif |
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| 499 | endif |
|---|
| 500 | endif |
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| 501 | endif |
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| 502 | endif |
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| 503 | endif |
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| 504 | endif |
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| 505 | endif |
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| 506 | |
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| 507 | |
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| 508 | all-am: intro $(bin_PROGRAMS) |
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| 509 | @echo "" |
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| 510 | @echo "Done." |
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| 511 | |
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| 512 | intro: |
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| 513 | @echo "" |
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| 514 | @echo "" |
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| 515 | @echo ".: Building [$(bin_PROGRAMS)]. Version $(VERSION) :." |
|---|
| 516 | @echo "" |
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| 517 | @echo "" |
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| 518 | |
|---|
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