| 1 | /* |
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| 2 | |
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| 3 | PHYML : a program that computes maximum likelihood phylogenies from |
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| 4 | DNA or AA homologous sequences |
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| 5 | |
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| 6 | Copyright (C) Stephane Guindon. Oct 2003 onward |
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| 7 | |
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| 8 | All parts of the source except where indicated are distributed under |
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| 9 | the GNU public licence. See http://www.opensource.org for details. |
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| 10 | |
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| 11 | */ |
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| 12 | |
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| 13 | #include <config.h> |
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| 14 | |
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| 15 | #ifndef FREE_H |
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| 16 | #define FREE_H |
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| 17 | |
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| 18 | #include "utilities.h" |
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| 19 | |
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| 20 | void Free_All_Nodes_Light(t_tree *tree); |
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| 21 | void Free_All_Edges_Light(t_tree *tree); |
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| 22 | void Free_Mat(matrix *mat); |
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| 23 | void Free_Partial_Lk(phydbl *p_lk,int len,int n_catg); |
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| 24 | void Free_Tree(t_tree *tree); |
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| 25 | void Free_Bip(t_tree *tree); |
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| 26 | void Free_Edge_Labels(t_edge *b); |
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| 27 | void Free_Edge(t_edge *b); |
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| 28 | void Free_Node(t_node *n); |
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| 29 | void Free_Cseq(calign *data); |
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| 30 | void Free_Seq(align **d,int n_otu); |
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| 31 | void Free_All(align **d,calign *cdata,t_tree *tree); |
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| 32 | void Free_SubTree(t_edge *b_fcus,t_node *a,t_node *d,t_tree *tree); |
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| 33 | void Free_Tree_Ins_Tar(t_tree *tree); |
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| 34 | void Free_Tree_Pars(t_tree *tree); |
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| 35 | void Free_Edge_Pars(t_edge *b); |
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| 36 | void Free_Edge_Pars_Left(t_edge *b); |
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| 37 | void Free_Edge_Pars_Rght(t_edge *b); |
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| 38 | void Free_Tree_Lk(t_tree *tree); |
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| 39 | void Free_Node_Lk(t_node *n); |
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| 40 | void Free_Edge_Lk(t_edge *b); |
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| 41 | void Free_Model_Complete(t_mod *mod); |
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| 42 | void Free_Model_Basic(t_mod *mod); |
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| 43 | void Free_Custom_Model(t_mod *mod); |
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| 44 | void Free_Efrq(t_efrq *e_frq); |
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| 45 | void Free_Rmat(t_rmat *r_mat); |
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| 46 | void Free_Model(t_mod *mod); |
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| 47 | void Free(void *p); |
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| 48 | void Free_Input(option *io); |
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| 49 | void Free_Tree_List(t_treelist *list); |
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| 50 | void Free_St(supert_tree *st); |
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| 51 | void Free_Eigen(eigen *eigen_struct); |
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| 52 | void Free_One_Spr(t_spr *this_spr); |
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| 53 | void Free_Spr_List(t_tree *tree); |
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| 54 | void Free_Triplet(triplet *t); |
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| 55 | void Free_Actual_CSeq(calign *data); |
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| 56 | void Free_Prefix_Tree(pnode *n,int size); |
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| 57 | void Free_Pnode(pnode *n); |
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| 58 | void Free_Optimiz(t_opt *s_opt); |
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| 59 | void Free_Nexus(option *io); |
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| 60 | void Free_Nexus_Com(nexcom **com); |
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| 61 | void Free_Nexus_Parm(nexparm *parm); |
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| 62 | void Free_RAS(t_ras *ras); |
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| 63 | void XML_Free_XML_Tree(xml_node *node); |
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| 64 | void XML_Free_XML_Node(xml_node *node); |
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| 65 | void XML_Free_XML_Attr(xml_attr *attr); |
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| 66 | void XML_Free_XML_Ds(t_ds *ds); |
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| 67 | void Free_String(t_string *ts); |
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| 68 | void Free_Vect_Dbl(vect_dbl *v); |
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| 69 | void Free_Scalar_Dbl(scalar_dbl *v); |
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| 70 | void Free_Edge_Core(t_edge *b); |
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| 71 | void M4_Free_M4_Model(m4 *m4mod); |
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| 72 | void RATES_Free_Rates(t_rate *rates); |
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| 73 | void Free_Calib(t_cal *cal); |
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| 74 | void Free_Edge_Lk_Left(t_edge *b); |
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| 75 | void Free_Edge_Lk_Rght(t_edge *b); |
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| 76 | |
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| 77 | #endif |
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