| 1 | # Makefile August 2006 by Alexandros Stamatakis |
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| 2 | # Modified for compilation in ARB, Harald Meier 2008-01-21 |
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| 3 | |
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| 4 | .SUFFIXES: .o .c .h .depend |
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| 5 | |
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| 6 | RAXML_OBJECTS = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rogueEPA.o ancestralStates.o mem_alloc.o |
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| 7 | OBJECTS = $(RAXML_OBJECTS) |
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| 8 | RM = rm -f |
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| 9 | |
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| 10 | GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h |
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| 11 | CFLAGS_RAXML = -fomit-frame-pointer -funroll-loops -O2 -msse #-Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast |
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| 12 | |
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| 13 | # ---------------------------------------- |
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| 14 | # normal compilation: |
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| 15 | ifndef ARB |
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| 16 | CC = gcc |
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| 17 | CFLAGS = -O3 $(CFLAGS_RAXML) |
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| 18 | |
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| 19 | TARGET = . |
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| 20 | MAIN = $(EXE) |
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| 21 | #-xO5 |
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| 22 | # -pg |
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| 23 | LDFLAGS = -lm |
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| 24 | |
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| 25 | |
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| 26 | # ---------------------------------------- |
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| 27 | # compile for ARB: |
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| 28 | else |
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| 29 | |
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| 30 | CC = $(A_CC) |
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| 31 | TARGET = $(ARBHOME)/bin |
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| 32 | LDFLAGS = -lm |
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| 33 | CFLAGS = $(cflags) $(onlyC_flags) $(CFLAGS_RAXML) |
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| 34 | |
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| 35 | $(MAIN) : all |
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| 36 | |
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| 37 | endif |
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| 38 | |
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| 39 | TARGETS = $(TARGET)/raxmlHPC |
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| 40 | all : $(TARGETS) |
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| 41 | |
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| 42 | $(TARGET)/raxmlHPC : $(RAXML_OBJECTS) $(GLOBAL_DEPS) |
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| 43 | $(CC) $(CFLAGS) -o $(TARGET)/raxmlHPC $(RAXML_OBJECTS) $(LDFLAGS) |
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| 44 | .c.o: |
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| 45 | $(CC) $(CFLAGS) -c -o $@ $< |
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| 46 | |
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| 47 | clean : |
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| 48 | $(RM) $(OBJECTS) $(TARGETS) |
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| 49 | |
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| 50 | DEPENDS = $(OBJECTS:.o=.depend) |
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| 51 | depends: $(DEPENDS) |
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| 52 | @cat $(DEPENDS) | grep -v '^#' >>Makefile |
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| 53 | @rm $(DEPENDS) |
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| 54 | $(DEPENDS): depend.init |
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| 55 | depend.init: |
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| 56 | $(MAKEDEPEND) $(MAKEDEPENDFLAGS) 2>/dev/null # remove dependencies |
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| 57 | .c.depend: |
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| 58 | $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@ |
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| 59 | |
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| 60 | |
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| 61 | |
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| 62 | # DO NOT DELETE |
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| 63 | |
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| 64 | # Do not add dependencies manually - use 'make depend' in $ARBHOME |
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| 65 | # For formatting issues see SOURCE_TOOLS/fix_depends.pl (from GDE) |
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| 66 | |
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| 67 | ancestralStates.o: axml.h |
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| 68 | |
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| 69 | axml.o: axml.h |
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| 70 | axml.o: globalVariables.h |
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| 71 | |
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| 72 | bipartitionList.o: axml.h |
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| 73 | |
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| 74 | classify.o: axml.h |
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| 75 | |
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| 76 | evaluateGenericSpecial.o: axml.h |
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| 77 | |
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| 78 | evaluatePartialGenericSpecial.o: axml.h |
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| 79 | |
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| 80 | fastDNAparsimony.o: axml.h |
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| 81 | |
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| 82 | fastSearch.o: axml.h |
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| 83 | |
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| 84 | leaveDropping.o: axml.h |
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| 85 | |
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| 86 | makenewzGenericSpecial.o: axml.h |
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| 87 | |
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| 88 | mem_alloc.o: axml.h |
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| 89 | mem_alloc.o: $(ARBHOME)/INCLUDE/malloc.h |
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| 90 | |
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| 91 | models.o: axml.h |
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| 92 | |
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| 93 | multiple.o: axml.h |
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| 94 | |
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| 95 | newviewGenericSpecial.o: axml.h |
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| 96 | |
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| 97 | optimizeModel.o: axml.h |
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| 98 | |
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| 99 | parsePartitions.o: axml.h |
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| 100 | |
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| 101 | rapidBootstrap.o: axml.h |
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| 102 | |
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| 103 | rogueEPA.o: axml.h |
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| 104 | |
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| 105 | searchAlgo.o: axml.h |
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| 106 | |
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| 107 | topologies.o: axml.h |
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| 108 | |
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| 109 | treeIO.o: axml.h |
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