| 1 | # Wrapper to build RAxML versions |
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| 2 | |
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| 3 | # _PORTABLE_PTHREADS in axml.c to get pthread pinning on linux |
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| 4 | # use approx 1 thread per 500bp |
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| 5 | |
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| 6 | # Versions of RAxML to build |
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| 7 | VERSIONS:=SSE3.PTHREADS PTHREADS |
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| 8 | |
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| 9 | # AVX needs gcc >= 4.6.0 |
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| 10 | ifeq ("$(USE_GCC_46_OR_HIGHER)", "yes") |
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| 11 | VERSIONS+=AVX.PTHREADS |
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| 12 | endif |
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| 13 | |
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| 14 | TARFILE=sativa-RAxML-8.2.3-patched.tar.gz |
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| 15 | |
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| 16 | ifeq ($(DARWIN),1) |
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| 17 | MAKE_SUFFIX=mac |
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| 18 | else |
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| 19 | MAKE_SUFFIX=gcc |
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| 20 | endif |
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| 21 | |
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| 22 | RAXML_BIN=$(ARBHOME)/bin/raxmlHPC8-sativa- |
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| 23 | |
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| 24 | ## targets called by "upsteam makefile": |
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| 25 | |
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| 26 | all: install |
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| 27 | |
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| 28 | clean_local: |
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| 29 | rm -rf builddir.* |
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| 30 | rm -f $(RAXML_BIN)* |
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| 31 | rm -f unpack.*.stamp |
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| 32 | |
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| 33 | ## internal targets |
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| 34 | |
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| 35 | OBSOLETE_MENU=$(ARBHOME)/lib/gde/sativa.menu |
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| 36 | |
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| 37 | install: build |
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| 38 | cp arb_sativa.pl $(ARBHOME)/bin |
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| 39 | chmod a+x $(ARBHOME)/bin/arb_sativa.pl |
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| 40 | cp arb_raxml8_sativa.sh $(ARBHOME)/bin |
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| 41 | chmod a+x $(ARBHOME)/bin/arb_raxml8_sativa.sh |
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| 42 | test ! -e $(OBSOLETE_MENU) || rm $(OBSOLETE_MENU) |
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| 43 | find sativa -path "*.svn" -prune -o -type d -exec mkdir -p $(ARBHOME)/lib/{} \; |
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| 44 | find sativa -path "*.svn" -prune -o -type f -exec cp -p {} $(ARBHOME)/lib/{} \; |
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| 45 | # ln -s $(ARBHOME)/bin $(ARBHOME)/bin/sativa/epac/bin |
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| 46 | |
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| 47 | uninstall: |
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| 48 | rm -f $(ARBHOME)/bin/arb_sativa.pl |
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| 49 | rm -f $(ARBHOME)/bin/arb_raxml8_sativa.sh |
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| 50 | rm -rf $(ARBHOME)/lib/sativa |
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| 51 | rm -f $(ARBHOME)/lib/gde/sativa.menu |
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| 52 | |
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| 53 | clean: clean_local uninstall |
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| 54 | |
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| 55 | build: $(VERSIONS:%=$(RAXML_BIN)%) |
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| 56 | |
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| 57 | # (MAKEFLAGS need to be unset as ARB sets "-r", suppressing built-in rules, |
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| 58 | # which are needed by RAxML) |
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| 59 | |
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| 60 | $(RAXML_BIN)%: unpack.%.stamp Makefile |
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| 61 | ( MAKEFLAGS= onlyC_flags="$(onlyC_flags)" $(MAKE) -C $(<:unpack.%.stamp=builddir.%) -f Makefile.$(@:$(RAXML_BIN)%=%).$(MAKE_SUFFIX) ) 2>&1 | grep -vi ' warning: ' |
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| 62 | cp $(<:unpack.%.stamp=builddir.%)/raxmlHPC-* $@ |
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| 63 | |
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| 64 | unpack.%.stamp: $(TARFILE) |
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| 65 | ( DIR=$(@:unpack.%.stamp=builddir.%); \ |
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| 66 | rm -rf $$DIR &&\ |
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| 67 | mkdir $$DIR &&\ |
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| 68 | tar -C $$DIR --strip-components=1 -xzf $(TARFILE) &&\ |
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| 69 | arb_sed --in-place 's/-march=native//' $$DIR/Makefile* &&\ |
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| 70 | arb_sed --in-place 's/\(CFLAGS.*\)#/\1 $$(onlyC_flags) #/' $$DIR/Makefile* ) |
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| 71 | touch $@ -r $(TARFILE) |
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| 72 | |
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| 73 | %.stamp: |
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| 74 | echo $@ |
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| 75 | |
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| 76 | # prevent make from deleting intermediate targets: |
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| 77 | .SECONDARY: |
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| 78 | |
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| 79 | .PHONY: clean all install build uninstall clean_local |
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