| 1 | /* |
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| 2 | Copyright (c) 2006-2018 Elmar Pruesse <elmar.pruesse@ucdenver.edu> |
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| 3 | |
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| 4 | This file is part of SINA. |
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| 5 | SINA is free software: you can redistribute it and/or modify it under |
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| 6 | the terms of the GNU General Public License as published by the Free |
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| 7 | Software Foundation, either version 3 of the License, or (at your |
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| 8 | option) any later version. |
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| 9 | |
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| 10 | SINA is distributed in the hope that it will be useful, but WITHOUT ANY |
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| 11 | WARRANTY; without even the implied warranty of MERCHANTABILITY or |
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| 12 | FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License |
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| 13 | for more details. |
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| 14 | |
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| 15 | You should have received a copy of the GNU General Public License |
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| 16 | along with SINA. If not, see <http://www.gnu.org/licenses/>. |
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| 17 | |
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| 18 | Additional permission under GNU GPL version 3 section 7 |
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| 19 | |
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| 20 | If you modify SINA, or any covered work, by linking or combining it |
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| 21 | with components of ARB (or a modified version of that software), |
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| 22 | containing parts covered by the terms of the |
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| 23 | ARB-public-library-license, the licensors of SINA grant you additional |
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| 24 | permission to convey the resulting work. Corresponding Source for a |
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| 25 | non-source form of such a combination shall include the source code |
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| 26 | for the parts of ARB used as well as that of the covered work. |
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| 27 | */ |
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| 28 | |
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| 29 | #ifndef _FAMFINDER_H_ |
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| 30 | #define _FAMFINDER_H_ |
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| 31 | |
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| 32 | #include "tray.h" |
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| 33 | #include "search.h" |
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| 34 | |
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| 35 | #include <memory> |
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| 36 | #include <boost/program_options.hpp> |
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| 37 | |
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| 38 | |
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| 39 | namespace sina { |
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| 40 | |
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| 41 | enum TURN_TYPE { |
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| 42 | TURN_NONE=0, |
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| 43 | TURN_REVCOMP=1, |
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| 44 | TURN_ALL=2 |
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| 45 | }; |
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| 46 | std::ostream& operator<<(std::ostream& out, const sina::TURN_TYPE& t); |
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| 47 | void validate(boost::any& v, const std::vector<std::string>& values, |
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| 48 | sina::TURN_TYPE* /*unused*/,int /*unused*/); |
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| 49 | |
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| 50 | |
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| 51 | class famfinder { |
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| 52 | private: |
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| 53 | class impl; |
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| 54 | std::shared_ptr<impl> pimpl; |
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| 55 | public: |
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| 56 | famfinder(); |
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| 57 | famfinder(const famfinder& o); |
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| 58 | famfinder& operator=(const famfinder& o); |
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| 59 | ~famfinder(); |
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| 60 | tray operator()(const tray& t); |
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| 61 | |
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| 62 | int turn_check(const cseq& query, bool all); |
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| 63 | |
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| 64 | static void get_options_description(boost::program_options::options_description& main, |
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| 65 | boost::program_options::options_description& adv); |
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| 66 | static void validate_vm(boost::program_options::variables_map& vm, |
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| 67 | boost::program_options::options_description& desc); |
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| 68 | static ENGINE_TYPE get_engine(); |
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| 69 | }; |
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| 70 | |
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| 71 | |
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| 72 | } // namespace sina |
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| 73 | |
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| 74 | |
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| 75 | |
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| 76 | #endif // _FAMFINDER_H_ |
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| 77 | |
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| 78 | /* |
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| 79 | Local Variables: |
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| 80 | mode:c++ |
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| 81 | c-file-style:"stroustrup" |
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| 82 | c-file-offsets:((innamespace . 0)(inline-open . 0)(case-label . 0)) |
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| 83 | indent-tabs-mode:nil |
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| 84 | fill-column:99 |
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| 85 | End: |
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| 86 | */ |
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| 87 | // vim: filetype=cpp:expandtab:shiftwidth=4:tabstop=8:softtabstop=4:encoding=utf-8:textwidth=99 : |
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