|
Last change
on this file was
18863,
checked in by westram, 3 years ago
|
- document 'Import fields from calc-sheet'.
- link to 'Export fields (to calc-sheet using NDS)'.
- add another pointer, where to add helpfiles for GDE menus.
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
1.6 KB
|
| Line | |
|---|
| 1 | item:Import sequences using Readseq (slow) ... |
|---|
| 2 | itemmeta: R |
|---|
| 3 | itemmethod:arb_readseq $INPUTFILE -a -f2 > TmpOutputFile |
|---|
| 4 | itemhelp:readseq.help |
|---|
| 5 | |
|---|
| 6 | arg:INPUTFILE |
|---|
| 7 | argtype:filename |
|---|
| 8 | arglabel:Name of file to import |
|---|
| 9 | |
|---|
| 10 | out:TmpOutputFile |
|---|
| 11 | outformat:genbank |
|---|
| 12 | |
|---|
| 13 | |
|---|
| 14 | |
|---|
| 15 | item:Import fields from calc-sheet |
|---|
| 16 | itemmeta: c |
|---|
| 17 | itemmethod:( \ |
|---|
| 18 | import_from_table.pl "$FROMFILE" \ |
|---|
| 19 | --match "$MATCHCOL,$MATCHFIELD" \ |
|---|
| 20 | --write "$WRITECOL,$WRITEFIELD" \ |
|---|
| 21 | $SEPARATOR $OVERWRITE $SKIPUNKNOWN $MARKEDONLY $MARK $ASINT \ |
|---|
| 22 | )& |
|---|
| 23 | itemhelp:import_calc.help |
|---|
| 24 | |
|---|
| 25 | arg:FROMFILE |
|---|
| 26 | argtype:filename |
|---|
| 27 | arglabel:Import from CSV |
|---|
| 28 | argtext:csv |
|---|
| 29 | |
|---|
| 30 | arg:WRITECOL |
|---|
| 31 | arglabel:Write content of column |
|---|
| 32 | argtype:slider |
|---|
| 33 | argmin:1 |
|---|
| 34 | argmax:9999 |
|---|
| 35 | |
|---|
| 36 | arg:WRITEFIELD |
|---|
| 37 | arglabel:to field |
|---|
| 38 | argtype:text |
|---|
| 39 | |
|---|
| 40 | arg:MATCHFIELD |
|---|
| 41 | arglabel:of species for which field |
|---|
| 42 | argtype:text |
|---|
| 43 | |
|---|
| 44 | arg:MATCHCOL |
|---|
| 45 | arglabel:matches content of column |
|---|
| 46 | argtype:slider |
|---|
| 47 | argmin:1 |
|---|
| 48 | argmax:9999 |
|---|
| 49 | |
|---|
| 50 | arg:SEPARATOR |
|---|
| 51 | argtype:choice_menu |
|---|
| 52 | arglabel:Columns are separated by |
|---|
| 53 | argchoice:tabs: |
|---|
| 54 | argchoice:commas:--csv |
|---|
| 55 | |
|---|
| 56 | arg:OVERWRITE |
|---|
| 57 | argtype:chooser |
|---|
| 58 | arglabel:Overwrite existing fields |
|---|
| 59 | argchoice:no: |
|---|
| 60 | argchoice:yes:--overwrite |
|---|
| 61 | |
|---|
| 62 | arg:SKIPUNKNOWN |
|---|
| 63 | argtype:choice_menu |
|---|
| 64 | arglabel:Unmatched entries will |
|---|
| 65 | argchoice:abort importing: |
|---|
| 66 | argchoice:be skipped:--skip-unknown |
|---|
| 67 | |
|---|
| 68 | arg:MARKEDONLY |
|---|
| 69 | argtype:choice_menu |
|---|
| 70 | arglabel:Import to |
|---|
| 71 | argchoice:all species: |
|---|
| 72 | argchoice:marked species:--marked-only |
|---|
| 73 | |
|---|
| 74 | arg:MARK |
|---|
| 75 | argtype:choice_menu |
|---|
| 76 | arglabel:Mark |
|---|
| 77 | argchoice:dont change: |
|---|
| 78 | argchoice:species when writing field (unmark rest):--mark |
|---|
| 79 | |
|---|
| 80 | arg:ASINT |
|---|
| 81 | arglabel:Field type |
|---|
| 82 | argtype:choice_menu |
|---|
| 83 | argchoice:Text: |
|---|
| 84 | argchoice:Numeric:--as-integer |
|---|
| 85 | |
|---|
| 86 | |
|---|
| 87 | |
|---|
Note: See
TracBrowser
for help on using the repository browser.
