source: trunk/GDEHELP/MENUS/import.menu

Last change on this file was 19501, checked in by westram, 3 weeks ago
  • implements #865:
    • allows to match species and table rows, using list entries (in cells and/or fields).
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 1.9 KB
Line 
1item:Import sequences using Readseq (slow) ...
2itemmeta: R
3itemmethod:arb_readseq $INPUTFILE -a -f2 > TmpOutputFile
4itemhelp:readseq.help
5
6arg:INPUTFILE
7argtype:filename
8arglabel:Name of file to import
9
10out:TmpOutputFile
11outformat:genbank
12
13
14
15item:Import fields from calc-sheet
16itemmeta: c
17itemmethod:( \
18        import_from_table.pl "$FROMFILE" \
19                --match "$MATCHCOL,$MATCHFIELD" \
20                --write "$WRITECOL,$WRITEFIELD" \
21                --mode "$MATCHMODE" \
22                $SEPARATOR \
23                $OVERWRITE \
24                $SKIPUNKNOWN \
25                $SKIPEMPTY \
26                $MARKEDONLY \
27                $MARK \
28                $ASINT \
29        )&
30itemhelp:import_calc.help
31
32arg:FROMFILE
33argtype:filename
34arglabel:Import from CSV
35argtext:csv
36
37arg:WRITECOL
38arglabel:Write content of column
39argtype:slider
40argmin:1
41argmax:9999
42
43arg:WRITEFIELD
44arglabel:to field
45argtype:text
46
47arg:MATCHFIELD
48arglabel:of species for which field
49argtype:text
50
51arg:MATCHCOL
52arglabel:matches content of column
53argtype:slider
54argmin:1
55argmax:9999
56
57arg:MATCHMODE
58arglabel:using match mode
59argtype:text
60argtext:=
61
62arg:SEPARATOR
63argtype:choice_menu
64arglabel:Columns are separated by
65argchoice:tabs:
66argchoice:commas:--csv
67
68arg:OVERWRITE
69argtype:chooser
70arglabel:Overwrite existing fields
71argchoice:no:
72argchoice:yes:--overwrite
73
74arg:SKIPUNKNOWN
75argtype:choice_menu
76arglabel:Unmatched entries will
77argchoice:abort importing:
78argchoice:be skipped:--skip-unknown
79
80arg:SKIPEMPTY
81argtype:choice_menu
82arglabel:Empty entries will
83argchoice:be handled normally:
84argchoice:be skipped:--skip-empty
85
86arg:MARKEDONLY
87argtype:choice_menu
88arglabel:Import to
89argchoice:all species:
90argchoice:marked species:--marked-only
91
92arg:MARK
93argtype:choice_menu
94arglabel:Mark
95argchoice:dont change:
96argchoice:species when writing field (unmark rest):--mark
97
98arg:ASINT
99arglabel:Field type
100argtype:choice_menu
101argchoice:Text:
102argchoice:Numeric:--as-integer
103
104
105
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