| 1 | #Please insert up references in the next lines (line starts with keyword UP) |
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| 2 | UP arb.hlp |
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| 3 | UP glossary.hlp |
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| 4 | |
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| 5 | #Please insert subtopic references (line starts with keyword SUB) |
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| 6 | #SUB subtopic.hlp |
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| 7 | |
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| 8 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
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| 9 | |
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| 10 | #************* Title of helpfile !! and start of real helpfile ******** |
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| 11 | TITLE Visualisation of Sequence Associated Information (SAI) of Probe Match Results. |
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| 12 | |
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| 13 | OCCURRENCE |
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| 14 | In ARB primary Window (ARB_NT) : Probes (MENU) -> Match Probes (SUBMENU) |
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| 15 | |
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| 16 | DESCRIPTION |
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| 17 | |
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| 18 | This window aides Visualization of Sequence Associated Informations (SAIs) of the |
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| 19 | Potential Probe Targets that were designed (PROBE DESIGN TOOL) and matched using PROBE |
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| 20 | MATCH TOOL. |
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| 21 | |
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| 22 | Steps to be followed to VISUALIZE SAIs for the Potential Probe Targets: |
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| 23 | |
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| 24 | 1. Select SAI to be visualized from the Select SAI Menu. (FILE -> SELECT SAI) |
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| 25 | |
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| 26 | 2. Define Desired Colors (COLOR 0 to COLOR 9) for the respective CHARACTERS / |
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| 27 | NUMBERS in the selected SAI to paint as background of the Probe Targets |
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| 28 | list. (FILE -> DEFINE COLOR TRANSLATIONS) |
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| 29 | |
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| 30 | 3. Values or Characters contained in the SAIs selected can also be displayed |
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| 31 | below each Probe Targets by selecting the DISPLAY SAI CHECK BOX in DEFINE COLOR |
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| 32 | TRANSLATION window. |
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| 33 | |
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| 34 | 4. Once the desired SAI is selected and the respective color translation is |
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| 35 | defined, the SAI is painted as the background of the probe targets in the |
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| 36 | defined color ranges with respect to SAIs. |
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| 37 | |
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| 38 | One can change the COLOR RANGE by going to FILE -> SET COLORS AND FONTS menu. |
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| 39 | |
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| 40 | NOTES |
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| 41 | |
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| 42 | Color Translation Defnitions defined for various SAIs can be saved by clicking SAVE |
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| 43 | button in DEFINE COLOR TRANSLATION window. (Press STORE to save the definitions and |
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| 44 | press RESTORE to restore the saved definitions). |
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| 45 | |
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| 46 | To save the Color Translation Definitions permanently Go to ARB_NT window and save |
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| 47 | PROPERTIES under PROPERTIES MENU. |
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| 48 | |
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| 49 | EXAMPLES None |
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| 50 | |
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| 51 | WARNINGS None |
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| 52 | |
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| 53 | BUGS No bugs known |
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