| 1 | #Please insert up references in the next lines (line starts with keyword UP) |
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| 2 | UP arb.hlp |
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| 3 | UP glossary.hlp |
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| 4 | |
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| 5 | #Please insert subtopic references (line starts with keyword SUB) |
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| 6 | SUB set_color_of_listed.hlp |
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| 7 | SUB colorize.hlp |
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| 8 | SUB color_props_groups.hlp |
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| 9 | SUB tree_group.hlp |
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| 10 | SUB mark.hlp |
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| 11 | |
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| 12 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
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| 13 | |
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| 14 | #************* Title of helpfile !! and start of real helpfile ******** |
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| 15 | TITLE What are color groups? |
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| 16 | |
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| 17 | DESCRIPTION Color groups are groups of species (or other items like |
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| 18 | genes or experiments). |
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| 19 | |
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| 20 | Every species can only belong to ONE color group. |
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| 21 | That information is stored in the database entry 'ARB_color'. |
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| 22 | |
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| 23 | SECTION Assign species to color groups |
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| 24 | |
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| 25 | * marks <-> colors (see LINK{colorize.hlp}) |
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| 26 | * search result -> colors (see LINK{set_color_of_listed.hlp}) |
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| 27 | |
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| 28 | |
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| 29 | SECTION Display of color groups |
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| 30 | |
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| 31 | Colors of colorized items are shown at several places: |
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| 32 | |
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| 33 | * in the tree display, species information is drawn using |
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| 34 | the (species) item color. |
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| 35 | Branches/groups also use that color, if all species below |
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| 36 | belong to the same color group. |
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| 37 | |
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| 38 | * in ARB_EDIT4 the sequence area background is drawn |
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| 39 | using the (species) item color |
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| 40 | (see also LINK{e4_background_priority.hlp}). |
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| 41 | |
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| 42 | * in LINK{gene_map.hlp} the genes are displayed in the (gene) item color. |
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| 43 | |
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| 44 | |
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| 45 | The display colors of color groups can be customized in using |
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| 46 | LINK{color_props_groups.hlp}. |
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| 47 | |
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| 48 | SECTION Operations available for color groups: |
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| 49 | |
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| 50 | * unfold tree according to color groups (see LINK{tree_group.hlp}) |
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| 51 | * mark items (e.g. species) according to color groups (see LINK{colorize.hlp}) |
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| 52 | |
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| 53 | NOTES None |
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| 54 | |
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| 55 | EXAMPLES None |
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| 56 | |
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| 57 | WARNINGS None |
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| 58 | |
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| 59 | BUGS No bugs known |
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