| 1 | #Please insert up references in the next lines (line starts with keyword UP) |
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| 2 | UP arb.hlp |
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| 3 | UP glossary.hlp |
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| 4 | |
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| 5 | #Please insert subtopic references (line starts with keyword SUB) |
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| 6 | #SUB subtopic.hlp |
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| 7 | |
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| 8 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
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| 9 | |
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| 10 | #************* Title of helpfile !! and start of real helpfile ******** |
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| 11 | TITLE Mark by reference |
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| 12 | |
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| 13 | OCCURRENCE ARB_NT/Species/Mark by reference |
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| 14 | |
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| 15 | DESCRIPTION Allows to mark all species referred to in the content of a field. |
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| 16 | |
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| 17 | Select whether to check all or marked species. |
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| 18 | |
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| 19 | Enter the name of a field containing references. |
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| 20 | |
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| 21 | A reference is a single species ID ('name') or a |
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| 22 | comma-, semicolon- or space-separated list of species IDs. |
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| 23 | |
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| 24 | Choose whether |
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| 25 | - to abort if the field is missing or |
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| 26 | - to continue w/o warning |
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| 27 | |
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| 28 | Enter an ACI expression (see LINK{aci.hlp}) to postprocess |
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| 29 | the field content. The result must be a reference or |
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| 30 | reference-list (see above). |
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| 31 | |
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| 32 | The default ACI is '/[0-9.]+[%]*://'. This works with the information |
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| 33 | written by LINK{next_neighbours_listed.hlp} if score information has been added. |
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| 34 | |
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| 35 | For the 'used_rels' field written by the fast-aligner (see LINK{faligner.hlp}) or by |
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| 36 | sina (see LINK{sina_main.hlp}) you might use '/:[0-9]+//'. |
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| 37 | |
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| 38 | Predefined configurations for these two use-cases are available using the |
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| 39 | config manager button. |
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| 40 | |
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| 41 | Below the ACI there are 3 lines showing |
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| 42 | - the LINK{selected.hlp} |
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| 43 | - the content of the specified field |
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| 44 | - the result after processing it through the ACI |
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| 45 | |
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| 46 | Use the result line to check whether the specified ACI does generate a valid |
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| 47 | ID or list of IDs. |
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| 48 | |
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| 49 | Choose whether |
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| 50 | - to abort if an unknown reference is found or |
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| 51 | - to continue w/o warning |
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| 52 | |
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| 53 | Click 'Mark referenced' to mark all species which are referenced |
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| 54 | by the examined set of species. |
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| 55 | |
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| 56 | NOTES None |
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| 57 | |
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| 58 | EXAMPLES None |
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| 59 | |
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| 60 | WARNINGS Under development |
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| 61 | |
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| 62 | BUGS No bugs known |
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