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| 1 | #Please insert up references in the next lines (line starts with keyword UP) |
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| 2 | UP arb.hlp |
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| 3 | UP glossary.hlp |
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| 4 | |
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| 5 | #Please insert subtopic references (line starts with keyword SUB) |
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| 6 | #SUB subtopic.hlp |
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| 7 | |
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| 8 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
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| 9 | |
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| 10 | #************* Title of helpfile !! and start of real helpfile ******** |
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| 11 | TITLE Dot potentially missing bases |
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| 12 | |
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| 13 | OCCURRENCE ARB_EDIT4/Edit/Dot potentially missing bases |
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| 14 | |
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| 15 | DESCRIPTION This function changes all gaps ('-') where bases are possibly |
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| 16 | missing into dots ('.'). |
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| 17 | |
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| 18 | It applies to all (or all marked) sequences of one group. |
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| 19 | The cursor has to be placed on the consensus of the group. |
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| 20 | |
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| 21 | In columns where the group consensus shows an uppercase base, |
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| 22 | all gaps get replaced by dots. |
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| 23 | |
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| 24 | Additionally an SAI can be used to restrict the affected columns: |
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| 25 | |
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| 26 | - Select the wanted SAI |
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| 27 | - Edit characters that shall be used to select a column. |
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| 28 | |
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| 29 | Click on the 'Consensus' button to change the way how the consensus |
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| 30 | is calculated (see also 'LINK{e4_consensus.hlp}') |
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| 31 | |
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| 32 | NOTES None |
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| 33 | |
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| 34 | EXAMPLES None |
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| 35 | |
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| 36 | WARNINGS None |
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| 37 | |
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| 38 | BUGS No bugs known |
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