source: trunk/HELP_SOURCE/source/missbase.hlp

Last change on this file was 19532, checked in by westram, 3 months ago
  • reintegrates 'help' into 'trunk'
    • tweak arb documentation:
      • automatically link
        • ticket references to arb bug tracker (only affects html version).
        • found URLs.
      • page titles
        • warn about long titles.
        • introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
        • increase allowed length (limited by subwindow width).
      • cleanup header sections in all helpfiles.
      • fix and/or update several help files.
      • document syntax of help sources.
      • build issues:
        • when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
        • remove output files on error (including files below ARBHOME/lib).
        • pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
    • moves Tree admin + NDS menu entries to top of menu
  • adds: log:branches/help@18783:19531
File size: 1.0 KB
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4
5#       sub topics:
6#SUB     subtopic.hlp
7
8# format described in ../help.readme
9
10
11TITLE           Dot potentially missing bases
12
13OCCURRENCE      ARB_EDIT4/Edit/Dot potentially missing bases
14
15DESCRIPTION     This function changes all gaps ('-') where bases are possibly
16                missing into dots ('.').
17
18                It applies to all (or all marked) sequences of one group.
19                The cursor has to be placed on the consensus of the group.
20
21                In columns where the group consensus shows an uppercase base,
22                all gaps get replaced by dots.
23
24                Additionally an SAI can be used to restrict the affected columns:
25
26                - Select the wanted SAI
27                - Edit characters that shall be used to select a column.
28
29                Click on the 'Consensus' button to change the way how the consensus
30                is calculated (see also 'LINK{e4_consensus.hlp}')
31
32NOTES           None
33
34EXAMPLES        None
35
36WARNINGS        None
37
38BUGS            No bugs known
Note: See TracBrowser for help on using the repository browser.