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Last change
on this file was
19532,
checked in by westram, 3 months ago
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- reintegrates 'help' into 'trunk'
- tweak arb documentation:
- automatically link
- ticket references to arb
 tracker (only affects html version).
- found URLs.
- page titles
- warn about long titles.
- introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
- increase allowed length (limited by subwindow width).
- cleanup header sections in all helpfiles.
- fix and/or update several help files.
- document syntax of help sources.
- build issues:
- when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
- remove output files on error (including files below ARBHOME/lib).
- pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
- moves Tree admin + NDS menu entries to top of menu
- adds: log:branches/help@18783:19531
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File size:
1.9 KB
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| 1 | # main topics: |
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| 2 | UP arb.hlp |
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| 3 | UP glossary.hlp |
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| 4 | |
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| 5 | # sub topics: |
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| 6 | #SUB subtopic.hlp |
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| 7 | |
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| 8 | # format described in ../help.readme |
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| 9 | |
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| 10 | |
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| 11 | TITLE Nearest relatives of LISTED |
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| 12 | |
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| 13 | OCCURRENCE ARB_NT/Search/More search/Search Next Relatives of LISTED Species in PT Server |
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| 14 | |
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| 15 | DESCRIPTION Scans PT_SERVER database for the nearest relatives |
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| 16 | of the species currently listed in search window and writes |
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| 17 | them into a field of each of those species. |
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| 18 | |
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| 19 | See LINK{next_neighbours_common.hlp} for a description of the used algorithm |
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| 20 | and common parameters. |
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| 21 | |
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| 22 | SECTION SPECIFIC PARAMETERS |
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| 23 | |
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| 24 | Results |
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| 25 | |
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| 26 | Maximum number of relatives written into the DB field. |
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| 27 | Use 0 (or empty field) for unlimited number of relatives. |
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| 28 | |
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| 29 | Min. Score |
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| 30 | |
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| 31 | Sets a lower limit for the relative or absolute score. Relatives |
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| 32 | with lower score are NOT written into the DB field. |
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| 33 | |
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| 34 | Add score? |
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| 35 | |
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| 36 | Whether to add score information to the DB field or not. |
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| 37 | |
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| 38 | Result field |
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| 39 | |
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| 40 | Specifies the field into which the information about found relatives |
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| 41 | is written. |
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| 42 | |
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| 43 | |
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| 44 | NOTES You may use the generated database entries to mark species (see LINK{markbyref.hlp}). |
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| 45 | |
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| 46 | EXAMPLES None |
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| 47 | |
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| 48 | WARNINGS Storing IDs in a field will not survive complete ID renames (e.g. if nameserver changes). |
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| 49 | |
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| 50 | If the results are stored without score, you may use the following ACI expressions |
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| 51 | with LINK{mod_field_list.hlp} to convert the IDs into accession numbers |
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| 52 | |
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| 53 | | split(";") | findspec("readdb(acc)") | merge(";") |
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| 54 | |
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| 55 | and vice versa: |
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| 56 | |
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| 57 | | split(";") | findacc("readdb(name)") | merge(";") |
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| 58 | |
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| 59 | BUGS No bugs known |
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