| 1 | #Please insert up references in the next lines (line starts with keyword UP) |
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| 2 | UP arb.hlp |
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| 3 | UP glossary.hlp |
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| 4 | UP nt_tree_settings.hlp |
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| 5 | |
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| 6 | #Please insert subtopic references (line starts with keyword SUB) |
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| 7 | #SUB subtopic.hlp |
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| 8 | |
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| 9 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
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| 10 | |
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| 11 | #************* Title of helpfile !! and start of real helpfile ******** |
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| 12 | TITLE Expert tree settings |
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| 13 | |
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| 14 | OCCURRENCE ARB_NT/Properties/Tree options/Expert settings |
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| 15 | |
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| 16 | DESCRIPTION Provides the following expert display settings: |
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| 17 | |
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| 18 | - 'Parent attach' defines the vertical position where the parent branch |
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| 19 | gets attached to a subtree (dendrogram view only). |
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| 20 | |
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| 21 | The first two criteria determine the position of normal branches using |
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| 22 | |
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| 23 | * the size of subtrees and |
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| 24 | * the length of child branches. |
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| 25 | |
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| 26 | The third criteria defines the position of branches towards |
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| 27 | folded groups. |
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| 28 | |
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| 29 | If a criterion is set to 1.0, the parent is attached |
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| 30 | nearer towards the bigger subtree or towards the longer child branch |
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| 31 | (or at the long side of the group polygone). |
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| 32 | |
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| 33 | If a criterion is set to -1.0 the parent is attached |
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| 34 | nearer towards the smaller subtree or towards the shorter child branch |
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| 35 | (or at the short side of the group polygone). |
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| 36 | |
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| 37 | The group attach position is an independent value. |
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| 38 | |
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| 39 | The other two criteria |
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| 40 | |
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| 41 | * depend on the proportion defined by child-branch-lengths |
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| 42 | and/or by subtree-sizes (ie. using the size-criterion |
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| 43 | will ALWAYS center the parent branch at two equal-sized |
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| 44 | subtrees - regardless what value is customized for the size criterion!) |
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| 45 | |
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| 46 | * influence each other. To understand the effect of each criterion it's recommended |
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| 47 | to set the other criterion to zero (in which case the criterion is ignored). If |
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| 48 | both criteria are non-zero the effect of each of them will be applied |
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| 49 | proportionally to their absolute values. |
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| 50 | |
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| 51 | * the traditional default setting (hardcoded up to arb 6.0.x) is -1.0 for |
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| 52 | size and 0.0 for length. In that case the parent branch is attached |
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| 53 | exactly between the lowest species of the upper subtree and the topmost |
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| 54 | species of the lower subtree. |
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| 55 | |
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| 56 | The traditional default setting (hardcoded up to arb 6.0.x) is -1.0 for |
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| 57 | size and 0.0 for length. In that case the parent branch is attached |
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| 58 | exactly between the lowest species of the upper subtree and the topmost |
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| 59 | species of the lower subtree. |
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| 60 | |
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| 61 | - Text zoom/pad |
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| 62 | |
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| 63 | Select toggle to consider text for default zoom (otherwise only tree-structure is considered). |
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| 64 | Add extra padding in pixel (= amount of extra space for text; may be negative) |
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| 65 | |
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| 66 | |
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| 67 | NOTES None |
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| 68 | |
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| 69 | EXAMPLES None |
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| 70 | |
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| 71 | WARNINGS None |
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| 72 | |
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| 73 | BUGS No bugs known |
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