source: trunk/HELP_SOURCE/source/pa_reset.hlp

Last change on this file was 19532, checked in by westram, 5 weeks ago
  • reintegrates 'help' into 'trunk'
    • tweak arb documentation:
      • automatically link
        • ticket references to arb bug tracker (only affects html version).
        • found URLs.
      • page titles
        • warn about long titles.
        • introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
        • increase allowed length (limited by subwindow width).
      • cleanup header sections in all helpfiles.
      • fix and/or update several help files.
      • document syntax of help sources.
      • build issues:
        • when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
        • remove output files on error (including files below ARBHOME/lib).
        • pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
    • moves Tree admin + NDS menu entries to top of menu
  • adds: log:branches/help@18783:19531
File size: 1.0 KB
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4UP      pa_optimizer.hlp
5
6#       sub topics:
7SUB     pa_value.hlp
8
9# format described in ../help.readme
10
11
12TITLE           Reset optimal parsimony
13
14OCCURRENCE      ARB_PARSIMONY/Tree/Reset optimal parsimony
15
16DESCRIPTION     Two parsimony values are displayed in the top area of the
17                ARB_PARSIMONY main window:
18
19                * the current parsimony value (representing the costs of the current topology)
20                * the optimal parsimony value (=the best parsimony value seen so far)
21
22                When adding species to the tree, the LINK{pa_value.hlp} will normally raise.
23                That means the previously seen 'optimal parsimony value' may be too low now
24                and reaching a better value by LINK{pa_optimizer.hlp} may be impossible.
25
26                Use this function to reset the optimal parsimony value to the
27                current parsimony value.
28
29NOTES           Will not modify the tree.
30
31EXAMPLES        None
32
33WARNINGS        None
34
35BUGS            No bugs known
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