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Last change
on this file since 2 was
2,
checked in by oldcode, 25 years ago
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Initial revision
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Property svn:eol-style set to
native
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Property svn:keywords set to
Author Date Id Revision
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File size:
703 bytes
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| 1 | #ifndef _ALI_GLOBAL_INC_ |
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| 2 | #define _ALI_GLOBAL_INC_ |
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| 3 | |
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| 4 | #include "ali_arbdb.hxx" |
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| 5 | #include "ali_pt.hxx" |
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| 6 | #include "ali_profile.hxx" |
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| 7 | #include "ali_prealigner.hxx" |
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| 8 | |
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| 9 | |
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| 10 | class ALI_GLOBAL { |
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| 11 | private: |
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| 12 | public: |
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| 13 | |
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| 14 | /* misc */ |
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| 15 | char *prog_name; |
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| 16 | char *species_name; |
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| 17 | char *default_file; |
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| 18 | char *db_server; |
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| 19 | char *pt_server; |
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| 20 | |
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| 21 | /* other classes */ |
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| 22 | ALI_ARBDB arbdb; |
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| 23 | ALI_PT *pt; |
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| 24 | |
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| 25 | /* flags */ |
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| 26 | int mark_species_flag; |
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| 27 | |
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| 28 | /* limits */ |
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| 29 | float cost_low; |
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| 30 | float cost_middle; |
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| 31 | float cost_high; |
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| 32 | |
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| 33 | /* Contexts */ |
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| 34 | ALI_PT_CONTEXT pt_context; |
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| 35 | ALI_PROFILE_CONTEXT prof_context; |
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| 36 | ALI_PREALIGNER_CONTEXT preali_context; |
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| 37 | |
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| 38 | /* functions */ |
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| 39 | void init(int *argc, char *argv[]); |
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| 40 | }; |
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| 41 | |
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| 42 | #endif |
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