| 1 | // ============================================================ // |
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| 2 | // // |
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| 3 | // File : TreeWrite.h // |
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| 4 | // Purpose : // |
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| 5 | // // |
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| 6 | // Institute of Microbiology (Technical University Munich) // |
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| 7 | // www.arb-home.de // |
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| 8 | // // |
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| 9 | // ============================================================ // |
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| 10 | |
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| 11 | #ifndef TREEWRITE_H |
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| 12 | #define TREEWRITE_H |
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| 13 | |
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| 14 | #ifndef NDS_H |
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| 15 | #include <nds.h> |
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| 16 | #endif |
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| 17 | |
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| 18 | enum LabelQuoting { |
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| 19 | LABEL_DISALLOW_QUOTES = 0, // don't use quotes |
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| 20 | LABEL_SINGLE_QUOTES = 1, // use single quotes |
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| 21 | LABEL_DOUBLE_QUOTES = 2, // use double quotes |
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| 22 | |
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| 23 | LABEL_FORCE_QUOTES = 4, // force usage of quotes |
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| 24 | LABEL_FORCE_REPLACE = 8, // replace all problematic characters (default is to replace quotes in quoted labels) |
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| 25 | |
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| 26 | LABEL_ACCEPT_NON_ASCII = 16, // accept non-ASCII characters in export |
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| 27 | }; |
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| 28 | |
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| 29 | GB_ERROR TREE_write_Newick(GBDATA *gb_main, const char *tree_name, const TreeLabeler& labeler, bool save_branchlengths, bool save_bootstraps, bool save_groupnames, bool pretty, LabelQuoting quoteMode, const char *path); |
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| 30 | GB_ERROR TREE_write_XML(GBDATA *gb_main, const char *db_name, const char *tree_name, const TreeLabeler& labeler, bool skip_folded, const char *path); |
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| 31 | GB_ERROR TREE_export_tree(GBDATA *gb_main, FILE *out, TreeNode *tree, bool triple_root, bool export_branchlens, bool use_double_quotes); |
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| 32 | |
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| 33 | #else |
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| 34 | #error TreeWrite.h included twice |
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| 35 | #endif // TREEWRITE_H |
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