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Last change
on this file was
7812,
checked in by westram, 14 years ago
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merge from dev [7751] [7752]
- updated many old-style typedefs (typedef struct/enum)
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-
Property svn:eol-style set to
native
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Property svn:keywords set to
Author Date Id Revision
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File size:
986 bytes
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| 1 | #ifndef BASE_H |
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| 2 | #define BASE_H |
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| 3 | |
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| 4 | #ifndef DEFINES_H |
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| 5 | #include "defines.h" |
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| 6 | #endif |
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| 7 | |
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| 8 | enum BaseType { |
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| 9 | BASE_A, |
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| 10 | BASE_C, |
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| 11 | BASE_G, |
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| 12 | BASE_T, |
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| 13 | BASE_DEL |
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| 14 | |
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| 15 | }; |
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| 16 | |
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| 17 | #define BASETYPES 4 |
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| 18 | #define BASECHARS (BASETYPES+1) |
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| 19 | #define BASEQUAD (BASETYPES*BASETYPES) |
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| 20 | |
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| 21 | #define MAXBASECHAR ((int)'t') // vom ASCII-Wert her groesstes Zeichen |
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| 22 | #define PROB_NOT_DEF (-1.0) |
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| 23 | |
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| 24 | #define isDeleted(b) (charIsDelete[(int)(b)]) |
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| 25 | #define isHelical(b) (charIsHelical[(int)(b)]) |
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| 26 | #define isPairing(b1, b2) (basesArePairing[(int)(b1)][(int)(b2)]) |
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| 27 | |
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| 28 | extern char helixBaseChar[BASECHARS], |
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| 29 | loopBaseChar[BASECHARS]; |
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| 30 | extern int basesArePairing[BASECHARS][BASECHARS], // Kombination paarend? |
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| 31 | baseCharType[], |
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| 32 | charIsDelete[], |
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| 33 | charIsHelical[]; |
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| 34 | |
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| 35 | #define char2BaseType(c) ((enum BaseType)baseCharType[(int)c]) |
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| 36 | |
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| 37 | #ifdef __cplusplus |
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| 38 | extern "C" { |
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| 39 | #endif |
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| 40 | |
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| 41 | void initBaseLookups (); |
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| 42 | |
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| 43 | #ifdef __cplusplus |
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| 44 | } |
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| 45 | #endif |
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| 46 | |
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| 47 | #endif |
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