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TEST_split_expected.arb

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Last change on this file was 19167, checked in by westram, 2 years ago
reintegrates 'split' into 'trunk' adds: log:branches/split@19102:19166
File size: 82.7 KB

Line
1	/ARBDB ASCII/
2	species_data %% (%
3	species :5000 %% (%
4	name :7600 "CytLyti6"
5	flag :7000 "m"
6	full_name "Cytophaga lytica"
7	short_name "C. lytica"
8	strain "DSM 2039"
9	aacid "395 "
10	acc "ARB_6B3852E"
11	tmp "397 "
12	status "sorted"
13	aa "395 "
14	exclude "double entry"
15	aa_pro "395 "
16	ali_dna %% (%
17	data :7000 "............ATGGCAAAGGAAACTTTTACAACAGTATTG---------------TCTGAA---------TTAAGAAGTTTC---GATTCTGGTGCTGCAACTGATGGT------------CCAATG---------CCTGATGATGAA---------GAGCTTAAT------ACA---------GGTATGGGTGCTGATAAATTAGCTTCTCACTCT------AAGTTTAAAAAA------GAAATT---------------ATTGCA---------CTTCGT---------TTTACTAAGATCATAGAA........................."
18	%) /ali_dna/
19
20	ali_prot %% (%
21	data :7000 "....MAKETFTTVL-----SE---L*SF-DSGAATDG----PM---PDDE---ELN--T---GMGADKLASHS--KFKK--EI-----IA---LR---FTKIME........"
22	%) /ali_prot/
23
24	ali_dna_incomplete %% (%
25	data :7000 "............ATGGCAAAGGAAACTTTTACAACAGTATTG---------------TCTGAA---------TTAAGAAGTTTC---GATTCTGGTGCTGCAACTGATGGT------------CCAATG---------CCTGATGATGAA---------GAGCTTAAT------ACA---------GGTATGGGTGCTGATAAATTAGCTTCTCACTCT------AAGTTTAAAAAA------GAAATT---------------ATTGCA---------CTTCGT---------TTTACTAAGATCATAGAA........................."
26	%) /ali_dna_incomplete/
27
28	ali_dna_split1_1 %% (%
29	data "............ATGGCAAAGGAAACTTTTACAACAGTATT"
30	%) /ali_dna_split1_1/
31
32	ali_dna_split1_2 %% (%
33	data "G---------------TCTGAA---------TTAAGAAGTTTC---GATTCTGGTGCTGCAACTGATGGT------------CCAATG---------CCTGATGATGAA---------GAGCTTAAT------A"
34	%) /ali_dna_split1_2/
35
36	ali_dna_split1_3 %% (%
37	data "CA---------GGTATGGGTGCTGATAAATTAGCTTCTCACTCT------AAGTTTAAAAAA------GAAATT---------------ATTGCA---------CTTCGT---------TTTACTAAGATCATAGAA........................."
38	%) /ali_dna_split1_3/
39
40	ali_dna_split2_1 %% (%
41	data "............ATGGCAAAGGAAACTTTTACAACAGTATTG---------------TCTGAA---------TTAAGAAGTTTC---GATTCTGGTGCTGCAACTGATGGT------------CCAATG---------CCTGATGATGAA---------GAGCTTAAT"
42	%) /ali_dna_split2_1/
43
44	ali_dna_split2_2 %% (%
45	data "------ACA---------GGTATGGGTGCTGATAAATTAGCTTCTCACTCT------AAGTTTAAAAAA------GAAATT---------------ATTGCA---------CTTCGT---------TTTACTAAGATCATAGAA........................."
46	%) /ali_dna_split2_2/
47
48	ali_prot_split_1 %% (%
49	data "....MAKETFTTVL-----SE---L"
50	%) /ali_prot_split_1/
51
52	ali_prot_split_2 %% (%
53	data "*SF-DSGAATDG----PM---PDDE---ELN--T---GMG"
54	%) /ali_prot_split_2/
55
56	ali_prot_split_3 %% (%
57	data "ADKLASHS--KFKK--EI-----IA---LR---FTKIME........"
58	%) /ali_prot_split_3/
59
60	ali_dna_incomplete_split_1 %% (%
61	data "............ATGGCAAAGGAAACTTTTACAACAGTATTG---------------TCTGAA---------TTAAGAAGTTTC---GATTCTGGTGCTGCAACTGATGGT------------CCAATG---------CCTGATGATGAA"
62	%) /ali_dna_incomplete_split_1/
63
64	ali_dna_incomplete_split_2 %% (%
65	data "---------GAGCTTAAT------ACA---------GGTATGGGTGCTGATAAATTAGCTTCTCACTCT------AAGTTTAAAAAA------GAAATT---------------ATTGCA---------CTTCGT---------TTTACTAAGATCATAGAA........................."
66	%) /ali_dna_incomplete_split_2/
67
68	ali_overwrite_1 %% (%
69	data "............ATGGCAAAGGAAACTTTTACAACAGTATTG---------------TCTGAA---------TTAAGAAGTTTC---GATTCTGGTGCTGCAACTGATGGT------------CCAATG---------CCTGATGATGAA---------GAGCTTAAT--"
70	%) /ali_overwrite_1/
71
72	ali_overwrite_2 %% (%
73	data "----ACA---------GGTATGGGTGCTGATAAATTAGCTTCTCACTCT------AAGTTTAAAAAA------GAAATT---------------ATTGCA---------CTTCGT---------TTTACTAAGATCATAGAA........................."
74	%) /ali_overwrite_2/
75
76	%) /species/
77
78	species :5000 %% (%
79	name :7600 "TaxOcell"
80	flag :7000 "m"
81	full_name "Taxeobacter ocellatus"
82	short_name "T. ocellatus"
83	strain "Myx 2105"
84	aacid "395 "
85	acc "ARB_21595EF"
86	tmp "397 "
87	status "sorted"
88	aa "395 "
89	exclude "double entry"
90	aa_pro "395 "
91	ali_dna %% (%
92	data :7000 "............ATGGCTAAAGAAACTTTTACCACGGTGCTG---------------GCCGCT---------AAGCGTGACTTC---TCCTCGGGTGCTGCTACCGACGGG------------CCGATG---------CCCGACGACCCC---------GAGCTGAAC------ACC---------GGTATGGGTGCTGAAAACCTCAAGTCGCACAAA------AAGTTCTCGAAG------GAAATC---------------GTAGCT---------ATGCGC---------TTCACCGAAATCCTCGAC........................."
93	%) /ali_dna/
94
95	ali_prot %% (%
96	data :7000 "....MAKETFTTVL-----AA---KRDF-SSGAATDG----PM---PDDP---ELN--T---GMGAENLKSHK--KFSK--EI-----VA---MR---FTEILD........"
97	%) /ali_prot/
98
99	ali_dna_split2_1 %% (%
100	data "............ATGGCTAAAGAAACTTTTACCACGGTGCTG---------------GCCGCT---------AAGCGTGACTTC---TCCTCGGGTGCTGCTACCGACGGG------------CCGATG---------CCCGACGACCCC---------GAGCTGAAC"
101	%) /ali_dna_split2_1/
102
103	ali_dna_split2_2 %% (%
104	data "------ACC---------GGTATGGGTGCTGAAAACCTCAAGTCGCACAAA------AAGTTCTCGAAG------GAAATC---------------GTAGCT---------ATGCGC---------TTCACCGAAATCCTCGAC........................."
105	%) /ali_dna_split2_2/
106
107	ali_dna_split3_1 %% (%
108	data "."
109	%) /ali_dna_split3_1/
110
111	ali_dna_split3_2 %% (%
112	data "...........ATGGCTAAAGAAACTTTTACCACGGTGCTG---------------GCCGCT---------AAGCGTGACTTC---TCCTCGGGTGCTGCTACCGACGGG------------CCGATG---------CCCGACGACCCC---------G"
113	%) /ali_dna_split3_2/
114
115	ali_dna_split3_3 %% (%
116	data "A"
117	%) /ali_dna_split3_3/
118
119	ali_dna_split3_4 %% (%
120	data "GCTGAAC------ACC---------GGTATGGGTGCTGAAAACCTCAAGTCGCACAAA------AAGTTCTCGAAG------GAAATC---------------GTAGCT---------ATGCGC---------TTCACCGAAATCCTCGAC........................"
121	%) /ali_dna_split3_4/
122
123	ali_dna_split3_5 %% (%
124	data "."
125	%) /ali_dna_split3_5/
126
127	ali_prot_split_1 %% (%
128	data "....MAKETFTTVL-----AA---K"
129	%) /ali_prot_split_1/
130
131	ali_prot_split_2 %% (%
132	data "RDF-SSGAATDG----PM---PDDP---ELN--T---GMG"
133	%) /ali_prot_split_2/
134
135	ali_prot_split_3 %% (%
136	data "AENLKSHK--KFSK--EI-----VA---MR---FTEILD........"
137	%) /ali_prot_split_3/
138
139	%) /species/
140
141	species :5000 %% (%
142	name :7600 "BctFra12"
143	flag :7000 "h"
144	full_name "Bacteroides fragilis"
145	short_name "B. fragilis"
146	aacid "394 "
147	acc "ARB_4560B41C"
148	tmp "396 "
149	status "sorted"
150	aa "394 "
151	aa_pro "394 "
152	ali_dna %% (%
153	data :7000 "............ATGGCTAAAGAGAAATTTACTACTGTGTTG---------------TCTGAA---------CTTCGTTCT---TTCGATTCTGGTGCTGCTACTGATGGT------------CCGATG---------CCTGAAGATGCT---------GAGATGAAC------AAA---------GGTTTGGGTGAAGAT---AAGAAATCACACTCT------AAATTCAAGAAA------GAAATC---------------GTTGCA---------CTGCGT---------TTCACTGAAATTATCGAC........................."
154	%) /ali_dna/
155
156	ali_prot %% (%
157	data :7000 "....MAKEKFTTVL-----SE---LRS-FDSGAATDG----PM---PEDA---EMN--K---GLGED-KKSHS--KFKK--EI-----VA---LR---FTEIID........"
158	%) /ali_prot/
159
160	ali_dna_split1_1 %% (%
161	data "............ATGGCTAAAGAGAAATTTACTACTGTGTT"
162	%) /ali_dna_split1_1/
163
164	ali_dna_split1_2 %% (%
165	data "G---------------TCTGAA---------CTTCGTTCT---TTCGATTCTGGTGCTGCTACTGATGGT------------CCGATG---------CCTGAAGATGCT---------GAGATGAAC------A"
166	%) /ali_dna_split1_2/
167
168	ali_dna_split1_3 %% (%
169	data "AA---------GGTTTGGGTGAAGAT---AAGAAATCACACTCT------AAATTCAAGAAA------GAAATC---------------GTTGCA---------CTGCGT---------TTCACTGAAATTATCGAC........................."
170	%) /ali_dna_split1_3/
171
172	ali_dna_split2_1 %% (%
173	data "............ATGGCTAAAGAGAAATTTACTACTGTGTTG---------------TCTGAA---------CTTCGTTCT---TTCGATTCTGGTGCTGCTACTGATGGT------------CCGATG---------CCTGAAGATGCT---------GAGATGAAC"
174	%) /ali_dna_split2_1/
175
176	ali_dna_split2_2 %% (%
177	data "------AAA---------GGTTTGGGTGAAGAT---AAGAAATCACACTCT------AAATTCAAGAAA------GAAATC---------------GTTGCA---------CTGCGT---------TTCACTGAAATTATCGAC........................."
178	%) /ali_dna_split2_2/
179
180	ali_prot_split_1 %% (%
181	data "....MAKEKFTTVL-----SE---L"
182	%) /ali_prot_split_1/
183
184	ali_prot_split_2 %% (%
185	data "RS-FDSGAATDG----PM---PEDA---EMN--K---GLG"
186	%) /ali_prot_split_2/
187
188	ali_prot_split_3 %% (%
189	data "ED-KKSHS--KFKK--EI-----VA---LR---FTEIID........"
190	%) /ali_prot_split_3/
191
192	ali_overwrite_1 %% (%
193	data "............ATGGCTAAAGAGAAATTTACTACTGTGTTG---------------TCTGAA---------CTTCGTTCT---TTCGATTCTGGTGCTGCTACTGATGGT------------CCGATG---------CCTGAAGATGCT---------GAGATGAAC--"
194	%) /ali_overwrite_1/
195
196	ali_overwrite_2 %% (%
197	data "----AAA---------GGTTTGGGTGAAGAT---AAGAAATCACACTCT------AAATTCAAGAAA------GAAATC---------------GTTGCA---------CTGCGT---------TTCACTGAAATTATCGAC........................."
198	%) /ali_overwrite_2/
199
200	%) /species/
201
202	species :5000 %% (%
203	name :7600 "StrRamo3"
204	flag :7000 "h"
205	full_name "Streptomyces ramocissimus"
206	aacid "389 "
207	acc "ARB_30F12BA8"
208	tmp "392 "
209	aa "389 "
210	aa_pro "389 "
211	ali_dna %% (%
212	data :7000 "............ATGTCCAAGACGGCATACACCAAGGTCCTC---------------GGGACG---------TTCGTCCCG---TTCGACCGCGGGTCCGCGCTCGACGGG------------ATCATG---------CCGGGCGACGAG---------GAGCTCGAG------TCC---------GGCGCCGGGCTGGAG---------ACCCGGAGT------CGATTCTCGGCC------CGCGTC---------------GTTCCG---------CTGGGG---------TTCACGGCCCTTGTG............................"
213	%) /ali_dna/
214
215	ali_prot %% (%
216	data :7000 "....MSKTAYTKVL-----GT---FVP-FDRGSALDG----IM---PGDE---ELE--S---GAGLE---TRS--RFSA--RV-----VP---LG---FTALV........."
217	%) /ali_prot/
218
219	ali_dna_split2_1 %% (%
220	data "............ATGTCCAAGACGGCATACACCAAGGTCCTC---------------GGGACG---------TTCGTCCCG---TTCGACCGCGGGTCCGCGCTCGACGGG------------ATCATG---------CCGGGCGACGAG---------GAGCTCGAG"
221	%) /ali_dna_split2_1/
222
223	ali_dna_split2_2 %% (%
224	data "------TCC---------GGCGCCGGGCTGGAG---------ACCCGGAGT------CGATTCTCGGCC------CGCGTC---------------GTTCCG---------CTGGGG---------TTCACGGCCCTTGTG............................"
225	%) /ali_dna_split2_2/
226
227	ali_prot_split_1 %% (%
228	data "....MSKTAYTKVL-----GT---F"
229	%) /ali_prot_split_1/
230
231	ali_prot_split_2 %% (%
232	data "VP-FDRGSALDG----IM---PGDE---ELE--S---GAG"
233	%) /ali_prot_split_2/
234
235	ali_prot_split_3 %% (%
236	data "LE---TRS--RFSA--RV-----VP---LG---FTALV........."
237	%) /ali_prot_split_3/
238
239	%) /species/
240
241	species :5000 %% (%
242	name :7600 "StrCoel9"
243	file "[EBI] sctiuf3.em_ba"
244	gcg_id "SCTIUF3"
245	acc "X77040"
246	date "[EBI] 14-JAN-1994 (Rel. 38, Created) 15-MAY-1995 (Rel. 43, Last updated, Version 8)"
247	full_name "Streptomyces coelicolor"
248	tax "[EBI] Eubacteria; Firmicutes; Actinomycetes; Streptomycetes; Streptomycetaceae; Streptomyces."
249	author "[EBI] van Wezel G.P., Woudt L.P., Vervenne R., Verdurmen M.L., Vijgenboom E., Bosch L. van Wezel G.P."
250	title "[EBI] Cloning and sequencing of the tuf genes of Streptomyces coelicolor A3(2)."
251	journal "[EBI] Biochim. Biophys. Acta 1219:543-547(1994). Submitted (05-JAN-1994) to the EMBL/GenBank/DDBJ databases. G.P. Van Wezel, Leiden Uni., Dep. of Biochemistry, PO Box 9502, 2300 RA Leiden, NETHERLANDS"
252	strain "[EBI] M145"
253	aacid "392 "
254	nuc "1179 "
255	db_name "[EBI] Streptomyces coelicolor"
256	gene "[EBI] S.coelicolor tuf3 gene"
257	id "[EBI] SCTIUF3"
258	keywords "[EBI] elongation factor Tu3 tuf3 gene."
259	tmp "395 "
260	aa "392 "
261	aa_pro "392 "
262	ali_dna %% (%
263	data :7000 "............ATGTCCAAGACGGCGTACACCAAGGTCCTC---------------GGCAGCACCACCCAGTACGTTTCG---TTCGACCGCGGGTCCGCGCTGGACGGG------------ATCATG---------CCGGGTGACGAG---------GAGCTGGAG------TCC---------GGGGCGTCCGTCGAG---------ACGGCGCGG------CGTTTCTCGGCG------CGCGTG---------------GTGCCG---------CTGGGC---------TTCACCGCGGTGGAG............................"
264	%) /ali_dna/
265
266	ali_prot %% (%
267	data :7000 "....MSKTAYTKVL-----GSTTQYVS-FDRGSALDG----IM---PGDE---ELE--S---GASVE---TAR--RFSA--RV-----VP---LG---FTAVE........."
268	%) /ali_prot/
269
270	ali_dna_split1_1 %% (%
271	data "............ATGTCCAAGACGGCGTACACCAAGGTCCT"
272	%) /ali_dna_split1_1/
273
274	ali_dna_split1_2 %% (%
275	data "C---------------GGCAGCACCACCCAGTACGTTTCG---TTCGACCGCGGGTCCGCGCTGGACGGG------------ATCATG---------CCGGGTGACGAG---------GAGCTGGAG------T"
276	%) /ali_dna_split1_2/
277
278	ali_dna_split1_3 %% (%
279	data "CC---------GGGGCGTCCGTCGAG---------ACGGCGCGG------CGTTTCTCGGCG------CGCGTG---------------GTGCCG---------CTGGGC---------TTCACCGCGGTGGAG............................"
280	%) /ali_dna_split1_3/
281
282	ali_prot_split_1 %% (%
283	data "....MSKTAYTKVL-----GSTTQY"
284	%) /ali_prot_split_1/
285
286	ali_prot_split_2 %% (%
287	data "VS-FDRGSALDG----IM---PGDE---ELE--S---GAS"
288	%) /ali_prot_split_2/
289
290	ali_prot_split_3 %% (%
291	data "VE---TAR--RFSA--RV-----VP---LG---FTAVE........."
292	%) /ali_prot_split_3/
293
294	%) /species/
295
296	species :5000 %% (%
297	name :7600 "MucRacem"
298	flag :7000 "h"
299	full_name "Mucor racemosus"
300	aacid "458 "
301	acc "ARB_5ADBD66E"
302	tmp "445 "
303	exclude "does not align"
304	aa "458 "
305	aa_pro "441 "
306	ali_dna %% (%
307	data :7000 "............ATGGGTAAAGAG------ATTTACAAGTGTGGTGAGAAGGAAGCTGGTTCT---------TTCAAGTACGCC---TGGGTCTGTGCTGGTGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTAAGTGG---TCTCAAGATCGTTACAACATGTTGGGATGGAACGGTCCCGCTGCTGTC---------ACCACCAAGGAATCTGCCTCTTTCAACCACCCCGGTCAAATTGATCGTCGTTCCGGTATGTGTGTCGAAGCTTACCCTCTTGGTCGTTTCAAGGCTGTCGAGAAGGTTAAG------------AAA...."
308	%) /ali_dna/
309
310	ali_prot %% (%
311	data :7000 "....MGKE--IYKCGEKEAGS---FKYA-WVCAGGTGEFEAGISKDGKW-SQDRYNMLGWNGPAAV---TTKESASFNHPGQIDRRSGMCVEAYPLGRFKAVEKVK----K."
312	%) /ali_prot/
313
314	ali_prot_split_1 %% (%
315	data "....MGKE--IYKCGEKEAGS---F"
316	%) /ali_prot_split_1/
317
318	ali_prot_split_2 %% (%
319	data "KYA-WVCAGGTGEFEAGISKDGKW-SQDRYNMLGWNGPAA"
320	%) /ali_prot_split_2/
321
322	ali_prot_split_3 %% (%
323	data "V---TTKESASFNHPGQIDRRSGMCVEAYPLGRFKAVEKVK----K."
324	%) /ali_prot_split_3/
325
326	%) /species/
327
328	species :5000 %% (%
329	name :7600 "MucRace2"
330	flag :7000 "h"
331	full_name "Mucor racemosus"
332	aacid "457 "
333	acc "ARB_3627F120"
334	tmp "444 "
335	exclude "does not align"
336	aa "457 "
337	aa_pro "440 "
338	ali_dna %% (%
339	data :7000 "............ATGGGTAAGGAG------ATTTACAAGTGTGGTGAGAAGGAAGCTGGTTCT---------TTCAAGTACGCT---TGGGTCTGTGCTGGTGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTAAGTGG---TCTCAAGATCGTTACAACATGTTGGGATGGAACGGTCCCGCTGCTGTC---------ACCACCAAGGAATCTGCCTCTTTCAACCACCCCGGTCAAATTGATCGTCGTTCC---ATGTGTGTCGAAGCTTACCCTCTTGGTCGTTTCAAGGCCGTCGAGAAGGTTAAG------------AAA...."
340	%) /ali_dna/
341
342	ali_prot %% (%
343	data :7000 "....MGKE--IYKCGEKEAGS---FKYA-WVCAGGTGEFEAGISKDGKW-SQDRYNMLGWNGPAAV---TTKESASFNHPGQIDRRS-MCVEAYPLGRFKAVEKVK----K."
344	%) /ali_prot/
345
346	ali_dna_split1_1 %% (%
347	data "............ATGGGTAAGGAG------ATTTACAAGTG"
348	%) /ali_dna_split1_1/
349
350	ali_dna_split1_2 %% (%
351	data "TGGTGAGAAGGAAGCTGGTTCT---------TTCAAGTACGCT---TGGGTCTGTGCTGGTGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTAAGTGG---TCTCAAGATCGTTACAACATGTTGG"
352	%) /ali_dna_split1_2/
353
354	ali_dna_split1_3 %% (%
355	data "GATGGAACGGTCCCGCTGCTGTC---------ACCACCAAGGAATCTGCCTCTTTCAACCACCCCGGTCAAATTGATCGTCGTTCC---ATGTGTGTCGAAGCTTACCCTCTTGGTCGTTTCAAGGCCGTCGAGAAGGTTAAG------------AAA...."
356	%) /ali_dna_split1_3/
357
358	ali_prot_split_1 %% (%
359	data "....MGKE--IYKCGEKEAGS---F"
360	%) /ali_prot_split_1/
361
362	ali_prot_split_2 %% (%
363	data "KYA-WVCAGGTGEFEAGISKDGKW-SQDRYNMLGWNGPAA"
364	%) /ali_prot_split_2/
365
366	ali_prot_split_3 %% (%
367	data "V---TTKESASFNHPGQIDRRS-MCVEAYPLGRFKAVEKVK----K."
368	%) /ali_prot_split_3/
369
370	ali_overwrite_1 %% (%
371	data "............ATGGGTAAGGAG------ATTTACAAGTGTGGTGAGAAGGAAGCTGGTTCT---------TTCAAGTACGCT---TGGGTCTGTGCTGGTGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTAAGTGG---TCTCAAGATCGTTACAACAT"
372	%) /ali_overwrite_1/
373
374	ali_overwrite_2 %% (%
375	data "GTTGGGATGGAACGGTCCCGCTGCTGTC---------ACCACCAAGGAATCTGCCTCTTTCAACCACCCCGGTCAAATTGATCGTCGTTCC---ATGTGTGTCGAAGCTTACCCTCTTGGTCGTTTCAAGGCCGTCGAGAAGGTTAAG------------AAA...."
376	%) /ali_overwrite_2/
377
378	%) /species/
379
380	species :5000 %% (%
381	name :7600 "MucRace3"
382	flag :7000 "h"
383	full_name "Mucor racemosus"
384	aacid "458 "
385	acc "ARB_73CEEA74"
386	tmp "445 "
387	exclude "does not align"
388	aa "458 "
389	aa_pro "441 "
390	ali_dna %% (%
391	data :7000 "............ATGGGTAAAGAG------ATTTACAAGTGTGGTGAGAAGGAAGCTGGTTCC---------TTCAAGTACGCC---TGGGTTTGTGCTGGTGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTAAGTGG---TCTCAAGATCGTTACAACATGTTGGGATGGAACGGTCCCGCTGCTGTC---------ACCACCAAGGAATCTGCCTCTTTCAACCACCCCGGTCAAATTGATCGTCGTTCCGGTATGTGTGTCGAAGCTTACCCTCTTGGTCGTTTCAAGGCCGTCGAGAAGGTTAAG------------AAA...."
392	%) /ali_dna/
393
394	ali_prot %% (%
395	data :7000 "....MGKE--IYKCGEKEAGS---FKYA-WVCAGGTGEFEAGISKDGKW-SQDRYNMLGWNGPAAV---TTKESASFNHPGQIDRRSGMCVEAYPLGRFKAVEKVK----K."
396	%) /ali_prot/
397
398	ali_prot_split_1 %% (%
399	data "....MGKE--IYKCGEKEAGS---F"
400	%) /ali_prot_split_1/
401
402	ali_prot_split_2 %% (%
403	data "KYA-WVCAGGTGEFEAGISKDGKW-SQDRYNMLGWNGPAA"
404	%) /ali_prot_split_2/
405
406	ali_prot_split_3 %% (%
407	data "V---TTKESASFNHPGQIDRRSGMCVEAYPLGRFKAVEKVK----K."
408	%) /ali_prot_split_3/
409
410	%) /species/
411
412	species :5000 %% (%
413	name :7600 "AbdGlauc"
414	flag :7000 "h"
415	full_name "Absidia glauca"
416	aacid "458 "
417	acc "ARB_A706F312"
418	tmp "445 "
419	exclude "does not align"
420	aa "458 "
421	aa_pro "441 "
422	ali_dna %% (%
423	data :7000 "............ATGGGTAAAGAA------ATCTACAAGTGCGGTGAAAAGGAAGCTGGTTCC---------TTCAAGTACGCC---TGGGTGTGCGCTGCCGGTACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTAAGTGG---TCCGAACAACGCTTCAACATGTTGGGATGGAACGGTCCCGCTAACGTC---------ACCACTAAGGAAGCCGGCTCCTTCAACCATCCTGGTCAAATCGATCGTCGTTCCGGTATGTGTGTCGAAGCTTACCCTCTTGGTCGTTTCAAGGCCGTCGAAAAGGTTGAG------------AAA...."
424	%) /ali_dna/
425
426	ali_prot %% (%
427	data :7000 "....MGKE--IYKCGEKEAGS---FKYA-WVCAAGTGEFEAGISKDGKW-SEQRFNMLGWNGPANV---TTKEAGSFNHPGQIDRRSGMCVEAYPLGRFKAVEKVE----K."
428	%) /ali_prot/
429
430	ali_prot_split_1 %% (%
431	data "....MGKE--IYKCGEKEAGS---F"
432	%) /ali_prot_split_1/
433
434	ali_prot_split_2 %% (%
435	data "KYA-WVCAAGTGEFEAGISKDGKW-SEQRFNMLGWNGPAN"
436	%) /ali_prot_split_2/
437
438	ali_prot_split_3 %% (%
439	data "V---TTKEAGSFNHPGQIDRRSGMCVEAYPLGRFKAVEKVE----K."
440	%) /ali_prot_split_3/
441
442	%) /species/
443
444	species :5000 %% (%
445	name :7600 "CddAlbic"
446	flag :7000 "h"
447	full_name "Candida albicans"
448	aacid "458 "
449	acc "ARB_10F3627F"
450	tmp "445 "
451	exclude "does not align"
452	aa "458 "
453	aa_pro "441 "
454	ali_dna %% (%
455	data :7000 "............ATGGGTAAAGAA------ATTTACAAGTGTGGTGAAAAAGAAGCTGGTTCT---------TTCAAATACGCT---TGGGTCTGTGCTGGTGGTACTGGTGAATTCGAAGCCGGTATTTCTAAGGATGGTAAATGG---GACAAAAACAGATTTAACATGATTGGTTGGGAAGGTCCAGCTGGTGTT---------ACCACTAAGGGTTGTGACTCTTTCAACCATCCAGGTCAAATTGACAGAAGAACTGGTATGTGTGTTGAAGCTTTCCCATTAGGTAGATTCAAATCTGTTGAAAAATCCAAG------------AAA...."
456	%) /ali_dna/
457
458	ali_prot %% (%
459	data :7000 "....MGKE--IYKCGEKEAGS---FKYA-WVCAGGTGEFEAGISKDGKW-DKNFNMIGWEGPAGV---TTKGCDSFNHPGQIDTGMCVEAFPLGFKSVEKSK----K."
460	%) /ali_prot/
461
462	ali_prot_split_1 %% (%
463	data "....MGKE--IYKCGEKEAGS---F"
464	%) /ali_prot_split_1/
465
466	ali_prot_split_2 %% (%
467	data "KYA-WVCAGGTGEFEAGISKDGKW-DKN*FNMIGWEGPAG"
468	%) /ali_prot_split_2/
469
470	ali_prot_split_3 %% (%
471	data "V---TTKGCDSFNHPGQID*TGMCVEAFPLGFKSVEKSK----K."
472	%) /ali_prot_split_3/
473
474	%) /species/
475
476	%) /species_data/
477
478	tree_data %% (%
479	tree_prot %% (%
480	tree "N0.58482,3.41564;N0.58248,0.66885;N0.04119,0.27423;N0.27475,0.31772;LBctFra12\ALCytLyti6\ALTaxOcell\AN0.09705,0.15387;LStrRamo3\ALStrCoel9\AN0.12346,0.12108;N0.07553,0.07358;N0.06787,0.09757;N0.01554,-0.00981;LMucRacem\ALMucRace2\ALMucRace3\ALAbdGlauc\ALCddAlbic\A"
481	nnodes %i 9
482	ruler %% (%
483	size %f 0.1
484	RADIAL %% (%
485	ruler_y %f 5.80564
486	ruler_x %f 0
487	%) /RADIAL/
488
489	text_x %f 0
490	text_y %f 0
491	ruler_width %i 0
492	LIST %% (%
493	ruler_y %f 0
494	ruler_x %f 0
495	text_x %f 0
496	text_y %f 0
497	%) /LIST/
498
499	%) /ruler/
500
501	security %i 0
502	remark "Phylip Categories Neighbour dotgapmax _834\n[created as copy of 'tree_workdec']"
503	node %% (%
504	id %i 5
505	group_name "Eukarya EF-Tu"
506	%) /node/
507
508	node %% (%
509	id %i 1
510	group_name "Bacteria EF-Tu"
511	%) /node/
512
513	order %i 1
514	%) /tree_prot/
515
516	tree_prot_opti %% (%
517	tree "N0.673858,0.673858;N0.0262009,0.0851529;N0.0567686,0.0502183;N0.00436681,0.00437637;N0.00218341,0;LMucRace3\ALMucRacem\ALMucRace2\ALAbdGlauc\ALCddAlbic\AN0.171717,0.257653;N0.0227848,0.15736;N0.151899,0.149367;LCytLyti6\ALTaxOcell\ALBctFra12\AN0.0535714,0.059126;LStrCoel9\ALStrRamo3\A"
518	nnodes %i 9
519	ruler %% (%
520	size %f 0.1
521	RADIAL %% (%
522	ruler_y %f 5.80564
523	ruler_x %f 0
524	%) /RADIAL/
525
526	text_x %f 0
527	text_y %f 0
528	ruler_width %i 0
529	LIST %% (%
530	ruler_y %f 0
531	ruler_x %f 0
532	text_x %f 0
533	text_y %f 0
534	%) /LIST/
535
536	%) /ruler/
537
538	security %i 0
539	remark "Phylip Categories Neighbour dotgapmax _834\n[created as copy of 'tree_workdec']\n[created as copy of 'tree_prot']"
540	node %% (%
541	id %i 1
542	group_name "Eukarya EF-Tu"
543	%) /node/
544
545	node %% (%
546	id %i 5
547	group_name "Bacteria EF-Tu"
548	%) /node/
549
550	order %i 2
551	%) /tree_prot_opti/
552
553	%) /tree_data/
554
555	arb_presets %% (%
556	fonts %% (%
557	font0 %% (%
558	family %i 2
559	style %i 3
560	size %i 6
561	%) /font0/
562
563	font1 %% (%
564	family %i 2
565	style %i 3
566	size %i 5
567	%) /font1/
568
569	font2 %% (%
570	family %i 0
571	style %i 0
572	size %i 0
573	%) /font2/
574
575	font3 %% (%
576	family %i 0
577	style %i 0
578	size %i 0
579	%) /font3/
580
581	font4 %% (%
582	family %i 0
583	style %i 0
584	size %i 0
585	%) /font4/
586
587	font5 %% (%
588	family %i 0
589	style %i 0
590	size %i 0
591	%) /font5/
592
593	%) /fonts/
594
595	div %% (%
596	add_width_xfig %i 2
597	ruler_len %f 0.1
598	ruler_width %i 2
599	ruler_x_offset %f 0
600	ruler_y_offset %f 0.5
601	%) /div/
602
603	tool0 %% (%
604	text "fastdnaml"
605	tool_command "fastdnaml <!s &"
606	tool_file_type_save %i 3
607	tool_file_type_load %i 0
608	%) /tool0/
609
610	tool1 %% (%
611	text "treetool "
612	tool_command "treetool !s"
613	tool_file_type_save %i 6
614	tool_file_type_load %i 6
615	%) /tool1/
616
617	tool2 %% (%
618	text "edtu"
619	tool_command "arb_edtu : &"
620	tool_file_type_save %i 0
621	tool_file_type_load %i 0
622	%) /tool2/
623
624	tool3 %% (%
625	text "phyl"
626	tool_command "arb_phyl : &"
627	tool_file_type_save %i 0
628	tool_file_type_load %i 0
629	%) /tool3/
630
631	tool4 %% (%
632	text "adm"
633	tool_command "arb_adm : &"
634	tool_file_type_save %i 0
635	tool_file_type_load %i 0
636	%) /tool4/
637
638	tool5 %% (%
639	text "TOOL 6 "
640	tool_command "echo no_tool defined"
641	tool_file_type_save %i 0
642	tool_file_type_load %i 0
643	%) /tool5/
644
645	tool6 %% (%
646	text "TOOL 7 "
647	tool_command "echo no_tool defined"
648	tool_file_type_save %i 0
649	tool_file_type_load %i 0
650	%) /tool6/
651
652	tool7 %% (%
653	text "TOOL 8 "
654	tool_command "echo no_tool defined"
655	tool_file_type_save %i 0
656	tool_file_type_load %i 0
657	%) /tool7/
658
659	tool8 %% (%
660	text "TOOL 9 "
661	tool_command "echo no_tool defined"
662	tool_file_type_save %i 0
663	tool_file_type_load %i 0
664	%) /tool8/
665
666	viewkey %% (%
667	key_text "name"
668	len1 %i 10
669	flag2 %i 0
670	len2 %i 10
671	start %i 0
672	pars ""
673	group %i 0
674	leaf %i 1
675	%) /viewkey/
676
677	changekey %% (%
678	changekey_text "name"
679	changekey_type %i 0
680	%) /changekey/
681
682	changekey %% (%
683	changekey_text "full_name"
684	changekey_type %i 0
685	%) /changekey/
686
687	changekey %% (%
688	changekey_text "group_name"
689	changekey_type %i 0
690	%) /changekey/
691
692	changekey %% (%
693	changekey_text "flag"
694	changekey_type %i 0
695	%) /changekey/
696
697	changekey %% (%
698	changekey_text "alignment"
699	changekey_type %i 0
700	%) /changekey/
701
702	changekey %% (%
703	changekey_text "errors"
704	changekey_type %i 1
705	%) /changekey/
706
707	changekey %% (%
708	changekey_text "acc"
709	changekey_type %i 0
710	%) /changekey/
711
712	changekey %% (%
713	changekey_text "author"
714	changekey_type %i 0
715	%) /changekey/
716
717	changekey %% (%
718	changekey_text "date"
719	changekey_type %i 0
720	%) /changekey/
721
722	changekey %% (%
723	changekey_text "in use"
724	changekey_type %i 0
725	%) /changekey/
726
727	changekey %% (%
728	changekey_text "font"
729	changekey_type %i 1
730	%) /changekey/
731
732	viewkey %% (%
733	key_text "full_name"
734	len1 %i 30
735	flag2 %i 0
736	len2 %i 10
737	start %i 0
738	pars ""
739	group %i 0
740	leaf %i 1
741	%) /viewkey/
742
743	viewkey %% (%
744	key_text ""
745	len1 %i 40
746	flag2 %i 0
747	len2 %i 10
748	start %i 0
749	pars "taxonomy(1)"
750	group %i 1
751	leaf %i 1
752	%) /viewkey/
753
754	viewkey %% (%
755	key_text "acc"
756	len1 %i 90
757	flag2 %i 0
758	len2 %i 10
759	start %i 0
760	pars ":=[]"
761	group %i 0
762	leaf %i 1
763	%) /viewkey/
764
765	changekey %% (%
766	changekey_text "short_name"
767	changekey_type %i 0
768	%) /changekey/
769
770	viewkey %% (%
771	key_text "def"
772	len1 %i 10
773	flag2 %i 0
774	len2 %i 10
775	start %i 0
776	pars ""
777	group %i 0
778	leaf %i 0
779	%) /viewkey/
780
781	changekey %% (%
782	changekey_text "strain"
783	changekey_type %i 0
784	%) /changekey/
785
786	viewkey %% (%
787	key_text "ali_tuf_pro/data"
788	pars ""
789	len1 %i 30
790	start %i 0
791	group %i 0
792	leaf %i 0
793	%) /viewkey/
794
795	viewkey %% (%
796	key_text "aacid"
797	pars ""
798	len1 %i 30
799	start %i 0
800	group %i 0
801	leaf %i 0
802	%) /viewkey/
803
804	viewkey %% (%
805	key_text "ebi_tax"
806	pars ""
807	len1 %i 30
808	start %i 0
809	group %i 0
810	leaf %i 0
811	%) /viewkey/
812
813	viewkey %% (%
814	key_text "aa"
815	pars ""
816	len1 %i 30
817	start %i 0
818	group %i 0
819	leaf %i 0
820	%) /viewkey/
821
822	viewkey %% (%
823	key_text "aa_pro"
824	pars ""
825	len1 %i 30
826	start %i 0
827	group %i 0
828	leaf %i 0
829	%) /viewkey/
830
831	viewkey %% (%
832	key_text ""
833	len1 %i 30
834	pars ""
835	group %i 0
836	leaf %i 0
837	%) /viewkey/
838
839	viewkey %% (%
840	key_text ""
841	len1 %i 30
842	pars ""
843	group %i 0
844	leaf %i 0
845	%) /viewkey/
846
847	viewkey %% (%
848	key_text ""
849	len1 %i 30
850	pars ""
851	group %i 0
852	leaf %i 0
853	%) /viewkey/
854
855	viewkey %% (%
856	key_text ""
857	len1 %i 30
858	pars ""
859	group %i 0
860	leaf %i 0
861	%) /viewkey/
862
863	viewkey %% (%
864	key_text ""
865	len1 %i 30
866	pars ""
867	group %i 0
868	leaf %i 0
869	%) /viewkey/
870
871	viewkey %% (%
872	key_text ""
873	len1 %i 30
874	pars ""
875	group %i 0
876	leaf %i 0
877	%) /viewkey/
878
879	viewkey %% (%
880	key_text ""
881	len1 %i 30
882	pars ""
883	group %i 0
884	leaf %i 0
885	%) /viewkey/
886
887	viewkey %% (%
888	key_text ""
889	len1 %i 30
890	pars ""
891	group %i 0
892	leaf %i 0
893	%) /viewkey/
894
895	viewkey %% (%
896	key_text ""
897	len1 %i 30
898	pars ""
899	group %i 0
900	leaf %i 0
901	%) /viewkey/
902
903	viewkey %% (%
904	key_text ""
905	len1 %i 30
906	pars ""
907	group %i 0
908	leaf %i 0
909	%) /viewkey/
910
911	viewkey %% (%
912	key_text ""
913	len1 %i 30
914	pars ""
915	group %i 0
916	leaf %i 0
917	%) /viewkey/
918
919	viewkey %% (%
920	key_text ""
921	len1 %i 30
922	pars ""
923	group %i 0
924	leaf %i 0
925	%) /viewkey/
926
927	viewkey %% (%
928	key_text ""
929	len1 %i 30
930	pars ""
931	group %i 0
932	leaf %i 0
933	%) /viewkey/
934
935	viewkey %% (%
936	key_text ""
937	len1 %i 30
938	pars ""
939	group %i 0
940	leaf %i 0
941	%) /viewkey/
942
943	viewkey %% (%
944	key_text ""
945	len1 %i 30
946	pars ""
947	group %i 0
948	leaf %i 0
949	%) /viewkey/
950
951	viewkey %% (%
952	key_text ""
953	len1 %i 30
954	pars ""
955	group %i 0
956	leaf %i 0
957	%) /viewkey/
958
959	viewkey %% (%
960	key_text ""
961	len1 %i 30
962	pars ""
963	group %i 0
964	leaf %i 0
965	%) /viewkey/
966
967	viewkey %% (%
968	key_text ""
969	len1 %i 30
970	pars ""
971	group %i 0
972	leaf %i 0
973	%) /viewkey/
974
975	viewkey %% (%
976	key_text ""
977	len1 %i 30
978	pars ""
979	group %i 0
980	leaf %i 0
981	%) /viewkey/
982
983	viewkey %% (%
984	key_text ""
985	len1 %i 30
986	pars ""
987	group %i 0
988	leaf %i 0
989	%) /viewkey/
990
991	viewkey %% (%
992	key_text ""
993	len1 %i 30
994	pars ""
995	group %i 0
996	leaf %i 0
997	%) /viewkey/
998
999	viewkey %% (%
1000	key_text ""
1001	len1 %i 30
1002	pars ""
1003	group %i 0
1004	leaf %i 0
1005	%) /viewkey/
1006
1007	viewkey %% (%
1008	key_text ""
1009	len1 %i 30
1010	pars ""
1011	group %i 0
1012	leaf %i 0
1013	%) /viewkey/
1014
1015	viewkey %% (%
1016	key_text ""
1017	len1 %i 30
1018	pars ""
1019	group %i 0
1020	leaf %i 0
1021	%) /viewkey/
1022
1023	viewkey %% (%
1024	key_text ""
1025	len1 %i 30
1026	pars ""
1027	group %i 0
1028	leaf %i 0
1029	%) /viewkey/
1030
1031	viewkey %% (%
1032	key_text ""
1033	len1 %i 30
1034	pars ""
1035	group %i 0
1036	leaf %i 0
1037	%) /viewkey/
1038
1039	viewkey %% (%
1040	key_text ""
1041	len1 %i 30
1042	pars ""
1043	group %i 0
1044	leaf %i 0
1045	%) /viewkey/
1046
1047	viewkey %% (%
1048	key_text ""
1049	len1 %i 30
1050	pars ""
1051	group %i 0
1052	leaf %i 0
1053	%) /viewkey/
1054
1055	viewkey %% (%
1056	key_text ""
1057	len1 %i 30
1058	pars ""
1059	group %i 0
1060	leaf %i 0
1061	%) /viewkey/
1062
1063	viewkey %% (%
1064	key_text ""
1065	len1 %i 30
1066	pars ""
1067	group %i 0
1068	leaf %i 0
1069	%) /viewkey/
1070
1071	viewkey %% (%
1072	key_text ""
1073	len1 %i 30
1074	pars ""
1075	group %i 0
1076	leaf %i 0
1077	%) /viewkey/
1078
1079	viewkey %% (%
1080	key_text ""
1081	len1 %i 30
1082	pars ""
1083	group %i 0
1084	leaf %i 0
1085	%) /viewkey/
1086
1087	viewkey %% (%
1088	key_text ""
1089	len1 %i 30
1090	pars ""
1091	group %i 0
1092	leaf %i 0
1093	%) /viewkey/
1094
1095	viewkey %% (%
1096	key_text ""
1097	len1 %i 30
1098	pars ""
1099	group %i 0
1100	leaf %i 0
1101	%) /viewkey/
1102
1103	viewkey %% (%
1104	key_text ""
1105	len1 %i 30
1106	pars ""
1107	group %i 0
1108	leaf %i 0
1109	%) /viewkey/
1110
1111	viewkey %% (%
1112	key_text ""
1113	len1 %i 30
1114	pars ""
1115	group %i 0
1116	leaf %i 0
1117	%) /viewkey/
1118
1119	viewkey %% (%
1120	key_text ""
1121	len1 %i 30
1122	pars ""
1123	group %i 0
1124	leaf %i 0
1125	%) /viewkey/
1126
1127	viewkey %% (%
1128	key_text ""
1129	len1 %i 30
1130	pars ""
1131	group %i 0
1132	leaf %i 0
1133	%) /viewkey/
1134
1135	viewkey %% (%
1136	key_text ""
1137	len1 %i 30
1138	pars ""
1139	group %i 0
1140	leaf %i 0
1141	%) /viewkey/
1142
1143	viewkey %% (%
1144	key_text ""
1145	len1 %i 30
1146	pars ""
1147	group %i 0
1148	leaf %i 0
1149	%) /viewkey/
1150
1151	viewkey %% (%
1152	key_text ""
1153	len1 %i 30
1154	pars ""
1155	group %i 0
1156	leaf %i 0
1157	%) /viewkey/
1158
1159	viewkey %% (%
1160	key_text ""
1161	len1 %i 30
1162	pars ""
1163	group %i 0
1164	leaf %i 0
1165	%) /viewkey/
1166
1167	viewkey %% (%
1168	key_text ""
1169	len1 %i 30
1170	pars ""
1171	group %i 0
1172	leaf %i 0
1173	%) /viewkey/
1174
1175	viewkey %% (%
1176	key_text ""
1177	len1 %i 30
1178	pars ""
1179	group %i 0
1180	leaf %i 0
1181	%) /viewkey/
1182
1183	viewkey %% (%
1184	key_text ""
1185	len1 %i 30
1186	pars ""
1187	group %i 0
1188	leaf %i 0
1189	%) /viewkey/
1190
1191	viewkey %% (%
1192	key_text ""
1193	len1 %i 30
1194	pars ""
1195	group %i 0
1196	leaf %i 0
1197	%) /viewkey/
1198
1199	viewkey %% (%
1200	key_text ""
1201	len1 %i 30
1202	pars ""
1203	group %i 0
1204	leaf %i 0
1205	%) /viewkey/
1206
1207	viewkey %% (%
1208	key_text ""
1209	len1 %i 30
1210	pars ""
1211	group %i 0
1212	leaf %i 0
1213	%) /viewkey/
1214
1215	viewkey %% (%
1216	key_text ""
1217	len1 %i 30
1218	pars ""
1219	group %i 0
1220	leaf %i 0
1221	%) /viewkey/
1222
1223	viewkey %% (%
1224	key_text ""
1225	len1 %i 30
1226	pars ""
1227	group %i 0
1228	leaf %i 0
1229	%) /viewkey/
1230
1231	%) /arb_presets/
1232
1233	presets %% (%
1234	use "ali_dna"
1235	max_alignment_len %i 2000
1236	alignment_len %i 0
1237	max_name_len %i 9
1238	key_data %% (%
1239	key %% (%
1240	key_name "name"
1241	key_type %i 12
1242	key_hidden %i 0
1243	%) /key/
1244
1245	key %% (%
1246	key_name "full_name"
1247	key_type %i 12
1248	key_hidden %i 0
1249	%) /key/
1250
1251	key %% (%
1252	key_name "strain"
1253	key_type %i 12
1254	key_hidden %i 0
1255	%) /key/
1256
1257	key %% (%
1258	key_name "acc"
1259	key_type %i 12
1260	key_hidden %i 0
1261	%) /key/
1262
1263	key %% (%
1264	key_name "author"
1265	key_type %i 12
1266	key_hidden %i 0
1267	%) /key/
1268
1269	key %% (%
1270	key_name "title"
1271	key_type %i 12
1272	key_hidden %i 0
1273	%) /key/
1274
1275	key %% (%
1276	key_name "journal"
1277	key_type %i 12
1278	key_hidden %i 0
1279	%) /key/
1280
1281	key %% (%
1282	key_name "gene"
1283	key_type %i 12
1284	key_hidden %i 0
1285	%) /key/
1286
1287	key %% (%
1288	key_name "tmp"
1289	key_type %i 12
1290	key_hidden %i 0
1291	%) /key/
1292
1293	key %% (%
1294	key_name "flag"
1295	key_type %i 12
1296	key_hidden %i 0
1297	%) /key/
1298
1299	key %% (%
1300	key_name "short_name"
1301	key_type %i 12
1302	key_hidden %i 0
1303	%) /key/
1304
1305	key %% (%
1306	key_name "date"
1307	key_type %i 12
1308	key_hidden %i 0
1309	%) /key/
1310
1311	key %% (%
1312	key_name "file"
1313	key_type %i 12
1314	key_hidden %i 0
1315	%) /key/
1316
1317	key %% (%
1318	key_name "gcg_id"
1319	key_type %i 12
1320	key_hidden %i 0
1321	%) /key/
1322
1323	key %% (%
1324	key_name "tax"
1325	key_type %i 12
1326	key_hidden %i 0
1327	%) /key/
1328
1329	key %% (%
1330	key_name "aacid"
1331	key_type %i 12
1332	key_hidden %i 0
1333	%) /key/
1334
1335	key %% (%
1336	key_name "nuc"
1337	key_type %i 12
1338	key_hidden %i 0
1339	%) /key/
1340
1341	key %% (%
1342	key_name "db_name"
1343	key_type %i 12
1344	key_hidden %i 0
1345	%) /key/
1346
1347	key %% (%
1348	key_name "id"
1349	key_type %i 12
1350	key_hidden %i 0
1351	%) /key/
1352
1353	key %% (%
1354	key_name "keywords"
1355	key_type %i 12
1356	key_hidden %i 0
1357	%) /key/
1358
1359	key %% (%
1360	key_name "exclude"
1361	key_type %i 12
1362	key_hidden %i 0
1363	%) /key/
1364
1365	key %% (%
1366	key_name "status"
1367	key_type %i 12
1368	key_hidden %i 0
1369	%) /key/
1370
1371	key %% (%
1372	key_name "aa"
1373	key_type %i 12
1374	key_hidden %i 0
1375	%) /key/
1376
1377	key %% (%
1378	key_name "aa_pro"
1379	key_type %i 12
1380	key_hidden %i 0
1381	%) /key/
1382
1383	key %% (%
1384	key_name "ali_dna"
1385	key_type %i 15
1386	%) /key/
1387
1388	key %% (%
1389	key_name "ali_dna/data"
1390	key_type %i 12
1391	%) /key/
1392
1393	key %% (%
1394	key_name "ali_prot"
1395	key_type %i 15
1396	%) /key/
1397
1398	key %% (%
1399	key_name "ali_prot/data"
1400	key_type %i 12
1401	%) /key/
1402
1403	key %% (%
1404	key_name "ali_dna_incomplete"
1405	key_type %i 15
1406	%) /key/
1407
1408	key %% (%
1409	key_name "ali_dna_incomplete/data"
1410	key_type %i 12
1411	%) /key/
1412
1413	key %% (%
1414	key_name "ali_dna_split1_1"
1415	key_type %i 15
1416	%) /key/
1417
1418	key %% (%
1419	key_name "ali_dna_split1_1/data"
1420	key_type %i 12
1421	%) /key/
1422
1423	key %% (%
1424	key_name "ali_dna_split1_2"
1425	key_type %i 15
1426	%) /key/
1427
1428	key %% (%
1429	key_name "ali_dna_split1_2/data"
1430	key_type %i 12
1431	%) /key/
1432
1433	key %% (%
1434	key_name "ali_dna_split1_3"
1435	key_type %i 15
1436	%) /key/
1437
1438	key %% (%
1439	key_name "ali_dna_split1_3/data"
1440	key_type %i 12
1441	%) /key/
1442
1443	key %% (%
1444	key_name "ali_dna_split2_1"
1445	key_type %i 15
1446	%) /key/
1447
1448	key %% (%
1449	key_name "ali_dna_split2_1/data"
1450	key_type %i 12
1451	%) /key/
1452
1453	key %% (%
1454	key_name "ali_dna_split2_2"
1455	key_type %i 15
1456	%) /key/
1457
1458	key %% (%
1459	key_name "ali_dna_split2_2/data"
1460	key_type %i 12
1461	%) /key/
1462
1463	key %% (%
1464	key_name "ali_overwrite_1"
1465	key_type %i 15
1466	%) /key/
1467
1468	key %% (%
1469	key_name "ali_overwrite_1/data"
1470	key_type %i 12
1471	%) /key/
1472
1473	key %% (%
1474	key_name "ali_overwrite_2"
1475	key_type %i 15
1476	%) /key/
1477
1478	key %% (%
1479	key_name "ali_overwrite_2/data"
1480	key_type %i 12
1481	%) /key/
1482
1483	key %% (%
1484	key_name "ali_dna_split3_1"
1485	key_type %i 15
1486	%) /key/
1487
1488	key %% (%
1489	key_name "ali_dna_split3_1/data"
1490	key_type %i 12
1491	%) /key/
1492
1493	key %% (%
1494	key_name "ali_dna_split3_2"
1495	key_type %i 15
1496	%) /key/
1497
1498	key %% (%
1499	key_name "ali_dna_split3_2/data"
1500	key_type %i 12
1501	%) /key/
1502
1503	key %% (%
1504	key_name "ali_dna_split3_3"
1505	key_type %i 15
1506	%) /key/
1507
1508	key %% (%
1509	key_name "ali_dna_split3_3/data"
1510	key_type %i 12
1511	%) /key/
1512
1513	key %% (%
1514	key_name "ali_dna_split3_4"
1515	key_type %i 15
1516	%) /key/
1517
1518	key %% (%
1519	key_name "ali_dna_split3_4/data"
1520	key_type %i 12
1521	%) /key/
1522
1523	key %% (%
1524	key_name "ali_dna_split3_5"
1525	key_type %i 15
1526	%) /key/
1527
1528	key %% (%
1529	key_name "ali_dna_split3_5/data"
1530	key_type %i 12
1531	%) /key/
1532
1533	key %% (%
1534	key_name "ali_prot_split_1"
1535	key_type %i 15
1536	%) /key/
1537
1538	key %% (%
1539	key_name "ali_prot_split_1/data"
1540	key_type %i 12
1541	%) /key/
1542
1543	key %% (%
1544	key_name "ali_prot_split_2"
1545	key_type %i 15
1546	%) /key/
1547
1548	key %% (%
1549	key_name "ali_prot_split_2/data"
1550	key_type %i 12
1551	%) /key/
1552
1553	key %% (%
1554	key_name "ali_prot_split_3"
1555	key_type %i 15
1556	%) /key/
1557
1558	key %% (%
1559	key_name "ali_prot_split_3/data"
1560	key_type %i 12
1561	%) /key/
1562
1563	key %% (%
1564	key_name "ali_dna_incomplete_split_1"
1565	key_type %i 15
1566	%) /key/
1567
1568	key %% (%
1569	key_name "ali_dna_incomplete_split_1/data"
1570	key_type %i 12
1571	%) /key/
1572
1573	key %% (%
1574	key_name "ali_dna_incomplete_split_2"
1575	key_type %i 15
1576	%) /key/
1577
1578	key %% (%
1579	key_name "ali_dna_incomplete_split_2/data"
1580	key_type %i 12
1581	%) /key/
1582
1583	%) /key_data/
1584
1585	alignment %% (%
1586	alignment_name "ali_dna"
1587	alignment_len %i 337
1588	aligned %i 1
1589	alignment_write_security %i 5
1590	alignment_type "dna"
1591	alignment_rem ""
1592	auto_format %i 0
1593	%) /alignment/
1594
1595	alignment %% (%
1596	alignment_name "ali_prot"
1597	alignment_len %i 112
1598	aligned %i 1
1599	alignment_write_security %i 5
1600	alignment_type "ami"
1601	alignment_rem ""
1602	auto_format %i 0
1603	%) /alignment/
1604
1605	alignment %% (%
1606	alignment_name "ali_dna_incomplete"
1607	alignment_len %i 337
1608	aligned %i 1
1609	alignment_write_security %i 5
1610	alignment_type "dna"
1611	alignment_rem ""
1612	auto_format %i 0
1613	%) /alignment/
1614
1615	alignment :6000 %% (%
1616	alignment_name :7600 "ali_dna_split1_1"
1617	alignment_len :7000 %i 41
1618	aligned :7000 %i 1
1619	alignment_write_security :7600 %i 3
1620	alignment_type :7000 "rna"
1621	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_dna into 41-134-162 [1-41]"
1622	%) /alignment/
1623
1624	alignment :6000 %% (%
1625	alignment_name :7600 "ali_dna_split1_2"
1626	alignment_len :7000 %i 134
1627	aligned :7000 %i 1
1628	alignment_write_security :7600 %i 3
1629	alignment_type :7000 "rna"
1630	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_dna into 41-134-162 [42-175]"
1631	%) /alignment/
1632
1633	alignment :6000 %% (%
1634	alignment_name :7600 "ali_dna_split1_3"
1635	alignment_len :7000 %i 162
1636	aligned :7000 %i 1
1637	alignment_write_security :7600 %i 3
1638	alignment_type :7000 "rna"
1639	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_dna into 41-134-162 [176-337]"
1640	%) /alignment/
1641
1642	alignment :6000 %% (%
1643	alignment_name :7600 "ali_dna_split2_1"
1644	alignment_len :7000 %i 168
1645	aligned :7000 %i 1
1646	alignment_write_security :7600 %i 3
1647	alignment_type :7000 "rna"
1648	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_dna into 168-169 [1-168]"
1649	%) /alignment/
1650
1651	alignment :6000 %% (%
1652	alignment_name :7600 "ali_dna_split2_2"
1653	alignment_len :7000 %i 169
1654	aligned :7000 %i 1
1655	alignment_write_security :7600 %i 3
1656	alignment_type :7000 "rna"
1657	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_dna into 168-169 [169-337]"
1658	%) /alignment/
1659
1660	alignment :6000 %% (%
1661	alignment_name :7600 "ali_dna_split3_1"
1662	alignment_len :7000 %i 1
1663	aligned :7000 %i 1
1664	alignment_write_security :7600 %i 3
1665	alignment_type :7000 "rna"
1666	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_dna into 1-159-1-175-1 [1-1]"
1667	%) /alignment/
1668
1669	alignment :6000 %% (%
1670	alignment_name :7600 "ali_dna_split3_2"
1671	alignment_len :7000 %i 159
1672	aligned :7000 %i 1
1673	alignment_write_security :7600 %i 3
1674	alignment_type :7000 "rna"
1675	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_dna into 1-159-1-175-1 [2-160]"
1676	%) /alignment/
1677
1678	alignment :6000 %% (%
1679	alignment_name :7600 "ali_dna_split3_3"
1680	alignment_len :7000 %i 1
1681	aligned :7000 %i 1
1682	alignment_write_security :7600 %i 3
1683	alignment_type :7000 "rna"
1684	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_dna into 1-159-1-175-1 [161-161]"
1685	%) /alignment/
1686
1687	alignment :6000 %% (%
1688	alignment_name :7600 "ali_dna_split3_4"
1689	alignment_len :7000 %i 175
1690	aligned :7000 %i 1
1691	alignment_write_security :7600 %i 3
1692	alignment_type :7000 "rna"
1693	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_dna into 1-159-1-175-1 [162-336]"
1694	%) /alignment/
1695
1696	alignment :6000 %% (%
1697	alignment_name :7600 "ali_dna_split3_5"
1698	alignment_len :7000 %i 1
1699	aligned :7000 %i 1
1700	alignment_write_security :7600 %i 3
1701	alignment_type :7000 "rna"
1702	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_dna into 1-159-1-175-1 [337-337]"
1703	%) /alignment/
1704
1705	alignment :6000 %% (%
1706	alignment_name :7600 "ali_prot_split_1"
1707	alignment_len :7000 %i 25
1708	aligned :7000 %i 1
1709	alignment_write_security :7600 %i 3
1710	alignment_type :7000 "rna"
1711	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_prot into 25-40-47 [1-25]"
1712	%) /alignment/
1713
1714	alignment :6000 %% (%
1715	alignment_name :7600 "ali_prot_split_2"
1716	alignment_len :7000 %i 40
1717	aligned :7000 %i 1
1718	alignment_write_security :7600 %i 3
1719	alignment_type :7000 "rna"
1720	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_prot into 25-40-47 [26-65]"
1721	%) /alignment/
1722
1723	alignment :6000 %% (%
1724	alignment_name :7600 "ali_prot_split_3"
1725	alignment_len :7000 %i 47
1726	aligned :7000 %i 1
1727	alignment_write_security :7600 %i 3
1728	alignment_type :7000 "rna"
1729	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_prot into 25-40-47 [66-112]"
1730	%) /alignment/
1731
1732	alignment :6000 %% (%
1733	alignment_name :7600 "ali_dna_incomplete_split_1"
1734	alignment_len :7000 %i 150
1735	aligned :7000 %i 1
1736	alignment_write_security :7600 %i 3
1737	alignment_type :7000 "rna"
1738	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_dna_incomplete into 150-187 [1-150]"
1739	%) /alignment/
1740
1741	alignment :6000 %% (%
1742	alignment_name :7600 "ali_dna_incomplete_split_2"
1743	alignment_len :7000 %i 187
1744	aligned :7000 %i 1
1745	alignment_write_security :7600 %i 3
1746	alignment_type :7000 "rna"
1747	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_dna_incomplete into 150-187 [151-337]"
1748	%) /alignment/
1749
1750	alignment :6000 %% (%
1751	alignment_name :7600 "ali_existing_3"
1752	alignment_len :7000 %i 123
1753	aligned :7000 %i 0
1754	alignment_write_security :7600 %i 0
1755	alignment_type :7000 "dna"
1756	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created by TEST_split_alignment"
1757	%) /alignment/
1758
1759	alignment :6000 %% (%
1760	alignment_name :7600 "ali_overwrite_1"
1761	alignment_len :7000 %i 170
1762	aligned :7000 %i 1
1763	alignment_write_security :7600 %i 3
1764	alignment_type :7000 "rna"
1765	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_dna into 170-167 [1-170]"
1766	%) /alignment/
1767
1768	alignment :6000 %% (%
1769	alignment_name :7600 "ali_overwrite_2"
1770	alignment_len :7000 %i 167
1771	aligned :7000 %i 1
1772	alignment_write_security :7600 %i 3
1773	alignment_type :7000 "rna"
1774	alignment_rem :7000 "Thu Nov 29 22:33:09 1973: alignment created while splitting ali_dna into 170-167 [171-337]"
1775	%) /alignment/
1776
1777	%) /presets/
1778
1779	description "mini protein database"
1780	arb_edit %% (%
1781	top_area_species "conbac9:1 coneuc9:1 conarc9:1 "
1782	bottom_area_species ""
1783	flags %% (%
1784	flag0 %% (%
1785	%) /flag0/
1786
1787	flag1 %% (%
1788	%) /flag1/
1789
1790	flag2 %% (%
1791	%) /flag2/
1792
1793	flag3 %% (%
1794	%) /flag3/
1795
1796	flag4 %% (%
1797	%) /flag4/
1798
1799	%) /flags/
1800
1801	%) /arb_edit/
1802
1803	awt %% (%
1804	dtree %% (%
1805	baselinewidth %i 3
1806	verticaldist %f 1
1807	autojump %i 1
1808	greylevel %i 100
1809	show_circle %i 0
1810	circle_zoom %f 1
1811	ellipse %i 1
1812	max_size %f 1.5
1813	show_brackets %i 1
1814	%) /dtree/
1815
1816	%) /awt/
1817
1818	pars %% (%
1819	pars_type %i 0
1820	%) /pars/
1821
1822	genetic %% (%
1823	kh %% (%
1824	nodes %f 1.7
1825	maxdepth %i 15
1826	inc_depth %i 4
1827	static %% (%
1828	enable %i 1
1829	depth0 %i 2
1830	depth1 %i 2
1831	depth2 %i 2
1832	depth3 %i 2
1833	depth4 %i 1
1834	%) /static/
1835
1836	dynamic %% (%
1837	enable %i 1
1838	start %i 100
1839	maxx %i 6
1840	maxy %i 150
1841	%) /dynamic/
1842
1843	function_type %i 5
1844	%) /kh/
1845
1846	%) /genetic/
1847
1848	focus %% (%
1849	tree_name "tree_prot_opti"
1850	configuration "marked"
1851	%) /focus/
1852
1853	search %% (%
1854	configuration %% (%
1855	middle_area "\AFSAI:SAI's\ASCOUNTED_CHARS\ASHELIX_LINE\ASHELIX_PAIRS\ASall295_907rr3\ASall295_907rr5\ASbacr30\AScharpos\ASconarc9\ASconbac9\ASconbacif9\ASconbacselb9\ASconeuc9\ASconeucif9\ASdorgap\ASeucif2r3\ASif230\ASif2metvafil\ASif2mvan\ASif2r3\ASifgap\ASmvif2\ASposvar\AE\AFMore Sequences\ALcharpos\AE\ALtstmram3\ALtaqxpyro\ALtfrbisla\ALtthtmari\ALtcytlyti\ALttaxocel\ALtbadfrag\ALtfibsucc\ALtflbferr\ALtmypgall\ALtmypgeni\ALtmyppneu\ALtmyphomi\ALtslaplat\ALtccyanop\ALtananidu\ALtccryphi\ALtcchlore\ALtcchlrei\ALtcastlon\ALtceuggra\ALtcarabid\ALtcglymax\ALtcnictab\ALtptcnige\ALtstcoral\ALtbacsubt\ALtflxsinu\ALtchfaura\ALthesgiga\ALtclatrac\ALtspcaura\ALtchlvibr\ALtnanexed\ALtwolsucc\ALttibcupr\ALtpsmcepa\ALtsheputr\ALtesccol2\ALtsaltyp2\ALtesccoli\ALtsaltypm\ALtstiaura\ALtdnemasp\ALtthmther\ALtthmaqua\ALtmybtube\ALtcorglut\ALtbrevlin\ALtmiclute\ALtstmramo\ALtstmram2\ALtmsaccha"
1856	%) /configuration/
1857
1858	configuration %% (%
1859	name "charpos"
1860	top_area "\ASECOLI\AScharpos"
1861	middle_area "\AFSAI:SAI's\ASCOUNTED_CHARS\ASHELIX_LINE\ASHELIX_PAIRS\ASall295_907rr3\ASall295_907rr5\ASbacr30\ASconarc9\ASconbac9\ASconbacif9\ASconbacselb9\ASconeuc9\ASconeucif9\ASdorgap\ASeucif2r3\ASif230\ASif2metvafil\ASif2mvan\ASif2r3\ASifgap\ASmvif2\ASposvar\AE\AFMore Sequences\ALcharpos\AE\ALtstmram3\ALtaqxpyro\ALtfrbisla\ALtthtmari\ALtcytlyti\ALttaxocel\ALtbadfrag\ALtfibsucc\ALtflbferr\ALtmypgall\ALtmypgeni\ALtmyppneu\ALtmyphomi\ALtslaplat\ALtccyanop\ALtananidu\ALtccryphi\ALtcchlore\ALtcchlrei\ALtcastlon\ALtceuggra\ALtcarabid\ALtcglymax\ALtcnictab\ALtptcnige\ALtstcoral\ALtbacsubt\ALtflxsinu\ALtchfaura\ALthesgiga\ALtclatrac\ALtspcaura\ALtchlvibr\ALtnanexed\ALtwolsucc\ALttibcupr\ALtpsmcepa\ALtsheputr\ALtesccol2\ALtsaltyp2\ALtesccoli\ALtsaltypm\ALtstiaura\ALtdnemasp\ALtthmther\ALtthmaqua\ALtmybtube\ALtcorglut\ALtbrevlin\ALtmiclute\ALtstmramo\ALtstmram2\ALtmsaccha"
1862	%) /configuration/
1863
1864	pattern "aagctacct"
1865	case %i 1
1866	tu %i 1
1867	pat_gaps %i 1
1868	min_mismatches %i 0
1869	max_mismatches %i 0
1870	seq_gaps %i 1
1871	show %i 1
1872	open_folded %i 1
1873	autoJump %i 1
1874	probe %% (%
1875	case %i 1
1876	tu %i 1
1877	pat_gaps %i 1
1878	seq_gaps %i 1
1879	show %i 0
1880	open_folded %i 1
1881	autoJump %i 0
1882	reverse %i 0
1883	complement %i 0
1884	exact %i 0
1885	%) /probe/
1886
1887	primer %% (%
1888	pattern "AC-G--TU"
1889	case %i 1
1890	tu %i 1
1891	pat_gaps %i 1
1892	min_mismatches %i 0
1893	max_mismatches %i 0
1894	seq_gaps %i 1
1895	show %i 0
1896	open_folded %i 1
1897	autoJump %i 0
1898	%) /primer/
1899
1900	user1 %% (%
1901	pattern "LVELEnVDHGKTTnGAILVVnEGGRHTPnIREGGR"
1902	case %i 1
1903	tu %i 0
1904	pat_gaps %i 1
1905	reverse %i 0
1906	complement %i 0
1907	exact %i 0
1908	min_mismatches %i 0
1909	max_mismatches %i 1
1910	seq_gaps %i 1
1911	show %i 1
1912	open_folded %i 1
1913	autoJump %i 1
1914	%) /user1/
1915
1916	user2 %% (%
1917	pattern "GUT-TAG"
1918	case %i 1
1919	tu %i 1
1920	pat_gaps %i 1
1921	reverse %i 0
1922	complement %i 0
1923	exact %i 0
1924	min_mismatches %i 0
1925	max_mismatches %i 0
1926	seq_gaps %i 1
1927	show %i 0
1928	open_folded %i 1
1929	autoJump %i 1
1930	%) /user2/
1931
1932	primer1 %% (%
1933	pattern "GUT-TAG"
1934	case %i 1
1935	tu %i 1
1936	pat_gaps %i 1
1937	reverse %i 0
1938	complement %i 0
1939	exact %i 0
1940	min_mismatches %i 0
1941	max_mismatches %i 0
1942	seq_gaps %i 1
1943	show %i 0
1944	open_folded %i 1
1945	autoJump %i 1
1946	%) /primer1/
1947
1948	primer2 %% (%
1949	pattern "GUT-TAG"
1950	case %i 1
1951	tu %i 1
1952	pat_gaps %i 1
1953	reverse %i 0
1954	complement %i 0
1955	exact %i 0
1956	min_mismatches %i 0
1957	max_mismatches %i 0
1958	seq_gaps %i 1
1959	show %i 0
1960	open_folded %i 1
1961	autoJump %i 1
1962	%) /primer2/
1963
1964	primer3 %% (%
1965	pattern "GUT-TAG"
1966	case %i 1
1967	tu %i 1
1968	pat_gaps %i 1
1969	reverse %i 0
1970	complement %i 0
1971	exact %i 0
1972	min_mismatches %i 0
1973	max_mismatches %i 0
1974	seq_gaps %i 1
1975	show %i 0
1976	open_folded %i 1
1977	autoJump %i 1
1978	%) /primer3/
1979
1980	sig1 %% (%
1981	pattern "GUT-TAG"
1982	case %i 1
1983	tu %i 1
1984	pat_gaps %i 1
1985	reverse %i 0
1986	complement %i 0
1987	exact %i 0
1988	min_mismatches %i 0
1989	max_mismatches %i 0
1990	seq_gaps %i 1
1991	show %i 0
1992	open_folded %i 1
1993	autoJump %i 1
1994	%) /sig1/
1995
1996	sig2 %% (%
1997	pattern "GUT-TAG"
1998	case %i 1
1999	tu %i 1
2000	pat_gaps %i 1
2001	reverse %i 0
2002	complement %i 0
2003	exact %i 0
2004	min_mismatches %i 0
2005	max_mismatches %i 0
2006	seq_gaps %i 1
2007	show %i 0
2008	open_folded %i 1
2009	autoJump %i 1
2010	%) /sig2/
2011
2012	sig3 %% (%
2013	pattern "GUT-TAG"
2014	case %i 1
2015	tu %i 1
2016	pat_gaps %i 1
2017	reverse %i 0
2018	complement %i 0
2019	exact %i 0
2020	min_mismatches %i 0
2021	max_mismatches %i 0
2022	seq_gaps %i 1
2023	show %i 0
2024	open_folded %i 1
2025	autoJump %i 1
2026	%) /sig3/
2027
2028	%) /search/
2029
2030	nt %% (%
2031	protein_codon_type %i 1
2032	min_mismatches %i 0
2033	target_string ""
2034	primer_target_string ""
2035	gene_content ""
2036	%) /nt/
2037
2038	ARB_EDIT %% (%
2039	action ""
2040	value ""
2041	awar ""
2042	%) /ARB_EDIT/
2043
2044	www %% (%
2045	url_0 %% (%
2046	srt ""
2047	desc ""
2048	select %i 0
2049	%) /url_0/
2050
2051	url_1 %% (%
2052	srt ""
2053	desc ""
2054	select %i 0
2055	%) /url_1/
2056
2057	url_2 %% (%
2058	srt ""
2059	desc ""
2060	select %i 0
2061	%) /url_2/
2062
2063	url_3 %% (%
2064	srt ""
2065	desc ""
2066	select %i 0
2067	%) /url_3/
2068
2069	url_4 %% (%
2070	srt ""
2071	desc ""
2072	select %i 0
2073	%) /url_4/
2074
2075	url_5 %% (%
2076	srt ""
2077	desc ""
2078	select %i 0
2079	%) /url_5/
2080
2081	url_6 %% (%
2082	srt ""
2083	desc ""
2084	select %i 0
2085	%) /url_6/
2086
2087	url_7 %% (%
2088	srt ""
2089	desc ""
2090	select %i 0
2091	%) /url_7/
2092
2093	url_8 %% (%
2094	srt ""
2095	desc ""
2096	select %i 0
2097	%) /url_8/
2098
2099	url_9 %% (%
2100	srt ""
2101	desc ""
2102	select %i 0
2103	%) /url_9/
2104
2105	url_select %i 0
2106	browser "(netscape -remote 'openURL($(URL))' \|\| netscape '$(URL)')&"
2107	%) /www/
2108
2109	table_data %% (%
2110	%) /table_data/
2111
2112	merge %% (%
2113	remap_species_list ""
2114	remap_enable %i 0
2115	%) /merge/
2116
2117	submission %% (%
2118	%) /submission/
2119
2120	genom_db %i 0
2121	sai_visualize %% (%
2122	%) /sai_visualize/
2123
2124	MAUS %% (%
2125	excl_acc ""
2126	%) /MAUS/
2127
2128	checks %% (%
2129	check "fix gene_data"
2130	check "del_mark_move_REF"
2131	check "fix_dict_compress"
2132	check "duplicated_item_colors"
2133	%) /checks/
2134
2135	track %% (%
2136	initials "westram"
2137	%) /track/
2138
2139	secedit %% (%
2140	structs %% (%
2141	%) /structs/
2142
2143	%) /secedit/
2144
2145	extended_data %% (%
2146	extended %$ (%
2147	name :7000 "MAX_FREQUENCY"
2148	ali_dna %% (%
2149	data "============000857006886684066055575557754000006008000000877574000000000887654766777000655555507808066557557007000000000008555005008000000557584555864886600606555575807000808556000808000555775857975004005363876704587555888060555009775584006000788805008808808808000606556008000000565856808000808009055874606765605888800============000===="
2150	dat2 "============000000000000000000000000000000000000000000000000000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000363752000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000============000===="
2151	_TYPE "MFQ: [species: 10] [ignore gaps: yes]"
2152	%) /ali_dna/
2153
2154	ali_prot %% (%
2155	data "====050846555500000760006557055586550000055000555686654808508057566566754665055005800080550004500005666688====0="
2156	dat2 "====000000000000000000000501000000000000000000000000050000000000000062000000000000000000000000000000000200====0="
2157	_TYPE "MFQ: [species: 10] [ignore gaps: yes]"
2158	%) /ali_prot/
2159
2160	showsec %i 0
2161	ali_dna_split1_1 %% (%
2162	data "============00085700688668406605557555775"
2163	dat2 "============00000000000000000000000000000"
2164	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2165	%) /ali_dna_split1_1/
2166
2167	ali_dna_split1_2 %% (%
2168	data "40000060080000008775740000000008876547667770006555555078080665575570070000000000085550050080000005575845558648866006065555758070008085"
2169	dat2 "00000000000000000000000000000000000000001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000"
2170	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2171	%) /ali_dna_split1_2/
2172
2173	ali_dna_split1_3 %% (%
2174	data "56000808000555775857975004005363876704587555888060555009775584006000788805008808808808000606556008000000565856808000808009055874606765605888800============000===="
2175	dat2 "00000000000000000000000000000363752000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000============000===="
2176	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2177	%) /ali_dna_split1_3/
2178
2179	ali_dna_split2_1 %% (%
2180	data "============000857006886684066055575557754000006008000000877574000000000887654766777000655555507808066557557007000000000008555005008000000557584555864886600606555575807"
2181	dat2 "============000000000000000000000000000000000000000000000000000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000"
2182	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2183	%) /ali_dna_split2_1/
2184
2185	ali_dna_split2_2 %% (%
2186	data "000808556000808000555775857975004005363876704587555888060555009775584006000788805008808808808000606556008000000565856808000808009055874606765605888800============000===="
2187	dat2 "000000000000000000000000000000000000363752000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000============000===="
2188	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2189	%) /ali_dna_split2_2/
2190
2191	ali_dna_split3_1 %% (%
2192	data "="
2193	dat2 "="
2194	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2195	%) /ali_dna_split3_1/
2196
2197	ali_dna_split3_2 %% (%
2198	data "===========0008570068866840660555755577540000060080000008775740000000008876547667770006555555078080665575570070000000000085550050080000005575845558648866006065"
2199	dat2 "===========0000000000000000000000000000000000000000000000000000000000000000000001110000000000000000000000000000000000000000000000000000000000000000000000000000"
2200	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2201	%) /ali_dna_split3_2/
2202
2203	ali_dna_split3_3 %% (%
2204	data "5"
2205	dat2 "0"
2206	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2207	%) /ali_dna_split3_3/
2208
2209	ali_dna_split3_4 %% (%
2210	data "5575807000808556000808000555775857975004005363876704587555888060555009775584006000788805008808808808000606556008000000565856808000808009055874606765605888800============000==="
2211	dat2 "0000000000000000000000000000000000000000000363752000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000============000==="
2212	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2213	%) /ali_dna_split3_4/
2214
2215	ali_dna_split3_5 %% (%
2216	data "="
2217	dat2 "="
2218	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2219	%) /ali_dna_split3_5/
2220
2221	ali_prot_split_1 %% (%
2222	data "====050846555500000760006"
2223	dat2 "====000000000000000000000"
2224	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2225	%) /ali_prot_split_1/
2226
2227	ali_prot_split_2 %% (%
2228	data "5570555865500000550005556866548085080575"
2229	dat2 "5010000000000000000000000000500000000000"
2230	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2231	%) /ali_prot_split_2/
2232
2233	ali_prot_split_3 %% (%
2234	data "66566754665055005800080550004500005666688====0="
2235	dat2 "00062000000000000000000000000000000000200====0="
2236	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2237	%) /ali_prot_split_3/
2238
2239	ali_overwrite_1 %% (%
2240	data "============00085700688668406605557555775400000600800000087757400000000088765476677700065555550780806655755700700000000000855500500800000055758455586488660060655557580700"
2241	dat2 "============00000000000000000000000000000000000000000000000000000000000000000000011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000"
2242	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2243	%) /ali_overwrite_1/
2244
2245	ali_overwrite_2 %% (%
2246	data "0808556000808000555775857975004005363876704587555888060555009775584006000788805008808808808000606556008000000565856808000808009055874606765605888800============000===="
2247	dat2 "0000000000000000000000000000000000363752000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000============000===="
2248	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: yes]"
2249	%) /ali_overwrite_2/
2250
2251	%) /extended/
2252
2253	extended %$ (%
2254	name :7000 "MAX_FREQUENCY_GAPS"
2255	ali_dna %% (%
2256	data "============000857006886555555055575557754555555555555555877574999999999887654766555777655555507808066557557007555555555555555005555555555557584555555555555555555575807555555556555555555555775857975555888777765704587555555555555009775584555555788805555555555555666606556555555555565856555555555009055874606765605888800000000000000000===="
2257	dat2 "============000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000===="
2258	_TYPE "MFQ: [species: 10] [ignore gaps: no]"
2259	%) /ali_dna/
2260
2261	showsec %i 0
2262	ali_dna_split1_1 %% (%
2263	data "============00085700688655555505557555775"
2264	dat2 "============00000000000000000000000000000"
2265	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: no]"
2266	%) /ali_dna_split1_1/
2267
2268	ali_dna_split1_2 %% (%
2269	data "45555555555555558775749999999998876547665557776555555078080665575570075555555555555550055555555555575845555555555555555555758075555555"
2270	dat2 "00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000"
2271	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: no]"
2272	%) /ali_dna_split1_2/
2273
2274	ali_dna_split1_3 %% (%
2275	data "56555555555555775857975555888777765704587555555555555009775584555555788805555555555555666606556555555555565856555555555009055874606765605888800000000000000000===="
2276	dat2 "00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000===="
2277	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: no]"
2278	%) /ali_dna_split1_3/
2279
2280	ali_dna_split2_1 %% (%
2281	data "============000857006886555555055575557754555555555555555877574999999999887654766555777655555507808066557557007555555555555555005555555555557584555555555555555555575807"
2282	dat2 "============000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000"
2283	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: no]"
2284	%) /ali_dna_split2_1/
2285
2286	ali_dna_split2_2 %% (%
2287	data "555555556555555555555775857975555888777765704587555555555555009775584555555788805555555555555666606556555555555565856555555555009055874606765605888800000000000000000===="
2288	dat2 "000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000===="
2289	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: no]"
2290	%) /ali_dna_split2_2/
2291
2292	ali_dna_split3_1 %% (%
2293	data "="
2294	dat2 "="
2295	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: no]"
2296	%) /ali_dna_split3_1/
2297
2298	ali_dna_split3_2 %% (%
2299	data "===========0008570068865555550555755577545555555555555558775749999999998876547665557776555555078080665575570075555555555555550055555555555575845555555555555555"
2300	dat2 "===========0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000"
2301	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: no]"
2302	%) /ali_dna_split3_2/
2303
2304	ali_dna_split3_3 %% (%
2305	data "5"
2306	dat2 "0"
2307	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: no]"
2308	%) /ali_dna_split3_3/
2309
2310	ali_dna_split3_4 %% (%
2311	data "5575807555555556555555555555775857975555888777765704587555555555555009775584555555788805555555555555666606556555555555565856555555555009055874606765605888800000000000000000==="
2312	dat2 "0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000==="
2313	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: no]"
2314	%) /ali_dna_split3_4/
2315
2316	ali_dna_split3_5 %% (%
2317	data "="
2318	dat2 "="
2319	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: no]"
2320	%) /ali_dna_split3_5/
2321
2322	ali_overwrite_1 %% (%
2323	data "============00085700688655555505557555775455555555555555587757499999999988765476655577765555550780806655755700755555555555555500555555555555758455555555555555555557580755"
2324	dat2 "============00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000"
2325	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: no]"
2326	%) /ali_overwrite_1/
2327
2328	ali_overwrite_2 %% (%
2329	data "5555556555555555555775857975555888777765704587555555555555009775584555555788805555555555555666606556555555555565856555555555009055874606765605888800000000000000000===="
2330	dat2 "0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000===="
2331	_TYPE "[splitted] MFQ: [species: 10] [ignore gaps: no]"
2332	%) /ali_overwrite_2/
2333
2334	%) /extended/
2335
2336	extended %$ (%
2337	name :7000 "CONSENSUS"
2338	ali_dna %% (%
2339	data "============ATGGctAAaGAg...t..Actaacaagtg.ggtga.aa.gaagctGgttc.---------TTcaa.tacgcc---tgggtcgGtGCTGctggtaatGGtgaattcgaagc.ggtATgtc.aaggatcctaA.gag.......aa.a.gagttcAAcatg.t.ggatgg.a.ggtcccgctGgtGtcga.------accaC.aAggaa...g.ctctTTCaaccA.cc.ggtcAAATtga..g..g..c.---aTgtctgt.gaagctttcCct.t.ggt.g.TTCAagGc.gTcgagaA.....ag============aaa===="
2340	_TYPE "CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2341	_SPECIES "CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2342	%) /ali_dna/
2343
2344	ali_prot %% (%
2345	data "====MgKE..tyklgekeags---fkya-wvgAagtGefeagiskdpkd....e.Nm.gw.gpagv.--ttk...sFnhpgqId--.-mcvea.plg-Ftavek..====k="
2346	_TYPE "CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2347	_SPECIES "CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2348	%) /ali_prot/
2349
2350	showsec %i 0
2351	ali_dna_split1_1 %% (%
2352	data "============ATGGctAAaGAg...t..Actaacaagtg"
2353	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2354	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2355	%) /ali_dna_split1_1/
2356
2357	ali_dna_split1_2 %% (%
2358	data ".ggtga.aa.gaagctGgttc.---------TTcaa.tacgcc---tgggtcgGtGCTGctggtaatGGtgaattcgaagc.ggtATgtc.aaggatcctaA.gag.......aa.a.gagttcAAcatg.t.g"
2359	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2360	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2361	%) /ali_dna_split1_2/
2362
2363	ali_dna_split1_3 %% (%
2364	data "gatgg.a.ggtcccgctGgtGtcga.------accaC.aAggaa...g.ctctTTCaaccA.cc.ggtcAAATtga..g..g..c.---aTgtctgt.gaagctttcCct.t.ggt.g.TTCAagGc.gTcgagaA.....ag============aaa===="
2365	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2366	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2367	%) /ali_dna_split1_3/
2368
2369	ali_dna_split2_1 %% (%
2370	data "============ATGGctAAaGAg...t..Actaacaagtg.ggtga.aa.gaagctGgttc.---------TTcaa.tacgcc---tgggtcgGtGCTGctggtaatGGtgaattcgaagc.ggtATgtc.aaggatcctaA.gag.......aa.a.gagttcAAc"
2371	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2372	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2373	%) /ali_dna_split2_1/
2374
2375	ali_dna_split2_2 %% (%
2376	data "atg.t.ggatgg.a.ggtcccgctGgtGtcga.------accaC.aAggaa...g.ctctTTCaaccA.cc.ggtcAAATtga..g..g..c.---aTgtctgt.gaagctttcCct.t.ggt.g.TTCAagGc.gTcgagaA.....ag============aaa===="
2377	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2378	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2379	%) /ali_dna_split2_2/
2380
2381	ali_dna_split3_1 %% (%
2382	data "="
2383	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2384	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2385	%) /ali_dna_split3_1/
2386
2387	ali_dna_split3_2 %% (%
2388	data "===========ATGGctAAaGAg...t..Actaacaagtg.ggtga.aa.gaagctGgttc.---------TTcaa.tacgcc---tgggtcgGtGCTGctggtaatGGtgaattcgaagc.ggtATgtc.aaggatcctaA.gag.......aa.a.g"
2389	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2390	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2391	%) /ali_dna_split3_2/
2392
2393	ali_dna_split3_3 %% (%
2394	data "a"
2395	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2396	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2397	%) /ali_dna_split3_3/
2398
2399	ali_dna_split3_4 %% (%
2400	data "gttcAAcatg.t.ggatgg.a.ggtcccgctGgtGtcga.------accaC.aAggaa...g.ctctTTCaaccA.cc.ggtcAAATtga..g..g..c.---aTgtctgt.gaagctttcCct.t.ggt.g.TTCAagGc.gTcgagaA.....ag============aaa==="
2401	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2402	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2403	%) /ali_dna_split3_4/
2404
2405	ali_dna_split3_5 %% (%
2406	data "="
2407	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2408	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2409	%) /ali_dna_split3_5/
2410
2411	ali_prot_split_1 %% (%
2412	data "====MgKE..tyklgekeags---f"
2413	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2414	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2415	%) /ali_prot_split_1/
2416
2417	ali_prot_split_2 %% (%
2418	data "kya-wvgAagtGefeagiskdpkd....e.Nm.gw.gpag"
2419	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2420	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2421	%) /ali_prot_split_2/
2422
2423	ali_prot_split_3 %% (%
2424	data "v.--ttk...sFnhpgqId--.-mcvea.plg-Ftavek..====k="
2425	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2426	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2427	%) /ali_prot_split_3/
2428
2429	ali_overwrite_1 %% (%
2430	data "============ATGGctAAaGAg...t..Actaacaagtg.ggtga.aa.gaagctGgttc.---------TTcaa.tacgcc---tgggtcgGtGCTGctggtaatGGtgaattcgaagc.ggtATgtc.aaggatcctaA.gag.......aa.a.gagttcAAcat"
2431	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2432	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2433	%) /ali_overwrite_1/
2434
2435	ali_overwrite_2 %% (%
2436	data "g.t.ggatgg.a.ggtcccgctGgtGtcga.------accaC.aAggaa...g.ctctTTCaaccA.cc.ggtcAAATtga..g..g..c.---aTgtctgt.gaagctttcCct.t.ggt.g.TTCAagGc.gTcgagaA.....ag============aaa===="
2437	_TYPE "[splitted] CON: [species: all] [number: 10] [count gaps: on] [threshold for gaps: 60] [simplify: off] [threshold for group: 30] [upper: 80] [lower: 50]"
2438	_SPECIES "[splitted] CytLyti6 TaxOcell BctFra12 StrRamo3 StrCoel9 MucRacem MucRace2 MucRace3 AbdGlauc CddAlbic "
2439	%) /ali_overwrite_2/
2440
2441	%) /extended/
2442
2443	extended %$ (%
2444	name :7000 "POS_VAR_BY_PARSIMONY"
2445	ali_dna %% (%
2446	_TYPE "PVP: Positional Variability by Parsimony: tree 'tree_prot' ntaxa 9"
2447	FREQUENCIES %% (%
2448	NA %N 1000001510202:3003.31.0319.020D.050E02-0F.01.-48686D-161BC141F0560AC0D38230247CA5829EE07F6FDF2C4566DEB40999E71DE7E06B3F036F87C09BD19E3C4B41685A25F0502D285C112A47BBDBEFF7F8B0460A5391F818604BC1E4FCFD7CCF-E079F81DEE084DA6603A319181F03F8E08938608C11820577EFC1819C90B47C0839C77182A-1989381A370448C09779B03DB410
2449	NC %N 1000001510202:0C.050D.013803.39.031D.041E.021F02-.B7E43E1B3AF1A9C1C68E4D661D967FCDE6B0CF3C1F2B56D2BC1F96E7C192195CF6615E15CF06BD9E4C-C3CD204B9CF1A9A0494E337AB7B255D5D43C1FFE5EF1B9068923C1EB7AF405AAF068F0ADDB9BC6D6674A784B3276C991E0EE34BA689A0741A11A9E113B41A3C51E129CF07DAF06AE396FF5A980
2450	NG %N 1000001510202:3003.31.0319.040D.011C.021D02-0F.05.B764361ACB43742B42389D0868362EFC34723DA0EF1FDD1279CD08D07B1B77E1AF14B919B73827-99F42B3420D0A9CFEF342B42A3C1CE7F8707E7F9F27FF2CA5227FC8E30E4FE7F4FDFDD076BC4E847BA12BD80B54CB741FC6DAF4CC04E307E8E3178E70994B41A3F39CE139E8FCE07D0866832E83BC5A0F3257DEE52.
2451	NU %N 1000001510202:0C.051A.031B02-1C.041D.021E.017C03.7D.0A3F.07.EEB90B86627AD7EFE1627B2A924723F3097EAFCD7E32FDD6D5611611CDAFB7776A960CDA951FD584160CDF9F3E24031B1EF47021F3634EC5028A9FD39193B5D2FE56F10AEA9CFBF468ED1D4A1ACC6089EFBD41A7103D86186638C7B5160C9C092C1B8B06E98433DF78DE6BDF6981D997D6E3C0
2452	TRANSITIONS %N 1000001510208.031202-2603.27.0405.0206.0107:.A2902864F91853E2850EB8F42961-DF7FFD052052F7C89D404E034FEAA9EDBB428A7D2F5C9E251EFD-F4D102D322A7DD60C7B7FB947F77F4194093FBF3322C8156.55BA9FE558FEF9257559FEBAEBBF70CFDFFECD1EEFEEFB8EC40AE753D8AA2ECEF3.
2453	TRANSVERSIONS %N 1000001510202.011803.1902-0D.0207:.264261AC8272363FDEBBF17327C79060B67DF9275B56D3-A159FDA37F67D39061E9F7E5E07D65A6F66240FDFB2D-DF95D517DE1DAE40E952067B2FF68BEFDBDFB313F3C8252CFBF24452FBF6-52B2DFA9E9DF.
2454	%) /FREQUENCIES/
2455
2456	data "............---664--2662440-44-61662664462-----4--4------662440.........442241224552---4444416-46-6-42442664--4-----------4442--4--4------6646606644104441--1-14624616-4---4-4442---4-4---662464422641--1--00205316-0446222444-1-441--6444461--1---6666-1--44-44-44-4---4-2464--4------4646614-4---4-4--6-614604-14415-14444--............---...."
2457	_CATEGORIES "1.000000 0.707107 0.500000 0.353553 0.250000 0.176777 0.125000 "
2458	%) /ali_dna/
2459
2460	showsec %i 0
2461	ali_dna_split1_1 %% (%
2462	_TYPE "[splitted] PVP: Positional Variability by Parsimony: tree 'tree_prot' ntaxa 9"
2463	FREQUENCIES "[split skipped copy of field 'FREQUENCIES' (type: 15)]"
2464	data "............---664--2662440-44-6166266446"
2465	_CATEGORIES "[splitted] 1.000000 0.707107 0.500000 0.353553 0.250000 0.176777 0.125000 "
2466	%) /ali_dna_split1_1/
2467
2468	ali_dna_split1_2 %% (%
2469	_TYPE "[splitted] PVP: Positional Variability by Parsimony: tree 'tree_prot' ntaxa 9"
2470	FREQUENCIES "[split skipped copy of field 'FREQUENCIES' (type: 15)]"
2471	data "2-----4--4------662440.........442241224552---4444416-46-6-42442664--4-----------4442--4--4------6646606644104441--1-14624616-4---4-44"
2472	_CATEGORIES "[splitted] 1.000000 0.707107 0.500000 0.353553 0.250000 0.176777 0.125000 "
2473	%) /ali_dna_split1_2/
2474
2475	ali_dna_split1_3 %% (%
2476	_TYPE "[splitted] PVP: Positional Variability by Parsimony: tree 'tree_prot' ntaxa 9"
2477	FREQUENCIES "[split skipped copy of field 'FREQUENCIES' (type: 15)]"
2478	data "42---4-4---662464422641--1--00205316-0446222444-1-441--6444461--1---6666-1--44-44-44-4---4-2464--4------4646614-4---4-4--6-614604-14415-14444--............---...."
2479	_CATEGORIES "[splitted] 1.000000 0.707107 0.500000 0.353553 0.250000 0.176777 0.125000 "
2480	%) /ali_dna_split1_3/
2481
2482	ali_dna_split2_1 %% (%
2483	_TYPE "[splitted] PVP: Positional Variability by Parsimony: tree 'tree_prot' ntaxa 9"
2484	FREQUENCIES "[split skipped copy of field 'FREQUENCIES' (type: 15)]"
2485	data "............---664--2662440-44-61662664462-----4--4------662440.........442241224552---4444416-46-6-42442664--4-----------4442--4--4------6646606644104441--1-14624616-4"
2486	_CATEGORIES "[splitted] 1.000000 0.707107 0.500000 0.353553 0.250000 0.176777 0.125000 "
2487	%) /ali_dna_split2_1/
2488
2489	ali_dna_split2_2 %% (%
2490	_TYPE "[splitted] PVP: Positional Variability by Parsimony: tree 'tree_prot' ntaxa 9"
2491	FREQUENCIES "[split skipped copy of field 'FREQUENCIES' (type: 15)]"
2492	data "---4-4442---4-4---662464422641--1--00205316-0446222444-1-441--6444461--1---6666-1--44-44-44-4---4-2464--4------4646614-4---4-4--6-614604-14415-14444--............---...."
2493	_CATEGORIES "[splitted] 1.000000 0.707107 0.500000 0.353553 0.250000 0.176777 0.125000 "
2494	%) /ali_dna_split2_2/
2495
2496	ali_dna_split3_1 %% (%
2497	_TYPE "[splitted] PVP: Positional Variability by Parsimony: tree 'tree_prot' ntaxa 9"
2498	FREQUENCIES "[split skipped copy of field 'FREQUENCIES' (type: 15)]"
2499	data "."
2500	_CATEGORIES "[splitted] 1.000000 0.707107 0.500000 0.353553 0.250000 0.176777 0.125000 "
2501	%) /ali_dna_split3_1/
2502
2503	ali_dna_split3_2 %% (%
2504	_TYPE "[splitted] PVP: Positional Variability by Parsimony: tree 'tree_prot' ntaxa 9"
2505	FREQUENCIES "[split skipped copy of field 'FREQUENCIES' (type: 15)]"
2506	data "...........---664--2662440-44-61662664462-----4--4------662440.........442241224552---4444416-46-6-42442664--4-----------4442--4--4------6646606644104441--1-14"
2507	_CATEGORIES "[splitted] 1.000000 0.707107 0.500000 0.353553 0.250000 0.176777 0.125000 "
2508	%) /ali_dna_split3_2/
2509
2510	ali_dna_split3_3 %% (%
2511	_TYPE "[splitted] PVP: Positional Variability by Parsimony: tree 'tree_prot' ntaxa 9"
2512	FREQUENCIES "[split skipped copy of field 'FREQUENCIES' (type: 15)]"
2513	data "6"
2514	_CATEGORIES "[splitted] 1.000000 0.707107 0.500000 0.353553 0.250000 0.176777 0.125000 "
2515	%) /ali_dna_split3_3/
2516
2517	ali_dna_split3_4 %% (%
2518	_TYPE "[splitted] PVP: Positional Variability by Parsimony: tree 'tree_prot' ntaxa 9"
2519	FREQUENCIES "[split skipped copy of field 'FREQUENCIES' (type: 15)]"
2520	data "24616-4---4-4442---4-4---662464422641--1--00205316-0446222444-1-441--6444461--1---6666-1--44-44-44-4---4-2464--4------4646614-4---4-4--6-614604-14415-14444--............---..."
2521	_CATEGORIES "[splitted] 1.000000 0.707107 0.500000 0.353553 0.250000 0.176777 0.125000 "
2522	%) /ali_dna_split3_4/
2523
2524	ali_dna_split3_5 %% (%
2525	_TYPE "[splitted] PVP: Positional Variability by Parsimony: tree 'tree_prot' ntaxa 9"
2526	FREQUENCIES "[split skipped copy of field 'FREQUENCIES' (type: 15)]"
2527	data "."
2528	_CATEGORIES "[splitted] 1.000000 0.707107 0.500000 0.353553 0.250000 0.176777 0.125000 "
2529	%) /ali_dna_split3_5/
2530
2531	ali_overwrite_1 %% (%
2532	_TYPE "[splitted] PVP: Positional Variability by Parsimony: tree 'tree_prot' ntaxa 9"
2533	FREQUENCIES "[split skipped copy of field 'FREQUENCIES' (type: 15)]"
2534	data "............---664--2662440-44-61662664462-----4--4------662440.........442241224552---4444416-46-6-42442664--4-----------4442--4--4------6646606644104441--1-14624616-4--"
2535	_CATEGORIES "[splitted] 1.000000 0.707107 0.500000 0.353553 0.250000 0.176777 0.125000 "
2536	%) /ali_overwrite_1/
2537
2538	ali_overwrite_2 %% (%
2539	_TYPE "[splitted] PVP: Positional Variability by Parsimony: tree 'tree_prot' ntaxa 9"
2540	FREQUENCIES "[split skipped copy of field 'FREQUENCIES' (type: 15)]"
2541	data "-4-4442---4-4---662464422641--1--00205316-0446222444-1-441--6444461--1---6666-1--44-44-44-4---4-2464--4------4646614-4---4-4--6-614604-14415-14444--............---...."
2542	_CATEGORIES "[splitted] 1.000000 0.707107 0.500000 0.353553 0.250000 0.176777 0.125000 "
2543	%) /ali_overwrite_2/
2544
2545	%) /extended/
2546
2547	extended %$ (%
2548	name :7000 "markerline"
2549	ali_dna %% (%
2550	bits %I "------------++++-+++++++++-++++---+---++--++++++++++++++++++-+-+++++++++++++--++++++++++------++++++++--+--++++++++++++++++---++-+++++++++--+-+----++-+++++++++----+-+++++++++--++++++++++---++-+-+++-++-++--+-+++++--++---++++++---+++++--+-+++++++++++-++++++++++++++++++--++++++++++-+-+-++++++++++++++--++-+++++-++-++++++------------+++----"
2551	_TYPE "FMX: Filter by Maximum Frequency: Start 0; Stop 336; Minhom 60%; Maxhom 100%"
2552	%) /ali_dna/
2553
2554	ali_prot %% (%
2555	bits %I "----+-++-+----+++++++++++--++---++--+++++--+++---++++--+++-+++-+-++-+++--++-+--++-++++++--+++--++++-++++++----+-"
2556	_TYPE "FMX: Filter by Maximum Frequency: Start 0; Stop 112; Minhom 60%; Maxhom 100%"
2557	%) /ali_prot/
2558
2559	ali_dna_split1_1 %% (%
2560	bits %I "------------++++-+++++++++-++++---+---++-"
2561	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 336; Minhom 60%; Maxhom 100%"
2562	%) /ali_dna_split1_1/
2563
2564	ali_dna_split1_2 %% (%
2565	bits %I "-++++++++++++++++++-+-+++++++++++++--++++++++++------++++++++--+--++++++++++++++++---++-+++++++++--+-+----++-+++++++++----+-+++++++++-"
2566	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 336; Minhom 60%; Maxhom 100%"
2567	%) /ali_dna_split1_2/
2568
2569	ali_dna_split1_3 %% (%
2570	bits %I "-++++++++++---++-+-+++-++-++--+-+++++--++---++++++---+++++--+-+++++++++++-++++++++++++++++++--++++++++++-+-+-++++++++++++++--++-+++++-++-++++++------------+++----"
2571	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 336; Minhom 60%; Maxhom 100%"
2572	%) /ali_dna_split1_3/
2573
2574	ali_dna_split2_1 %% (%
2575	bits %I "------------++++-+++++++++-++++---+---++--++++++++++++++++++-+-+++++++++++++--++++++++++------++++++++--+--++++++++++++++++---++-+++++++++--+-+----++-+++++++++----+-+++"
2576	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 336; Minhom 60%; Maxhom 100%"
2577	%) /ali_dna_split2_1/
2578
2579	ali_dna_split2_2 %% (%
2580	bits %I "++++++--++++++++++---++-+-+++-++-++--+-+++++--++---++++++---+++++--+-+++++++++++-++++++++++++++++++--++++++++++-+-+-++++++++++++++--++-+++++-++-++++++------------+++----"
2581	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 336; Minhom 60%; Maxhom 100%"
2582	%) /ali_dna_split2_2/
2583
2584	ali_dna_split3_1 %% (%
2585	bits %I "-"
2586	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 336; Minhom 60%; Maxhom 100%"
2587	%) /ali_dna_split3_1/
2588
2589	ali_dna_split3_2 %% (%
2590	bits %I "-----------++++-+++++++++-++++---+---++--++++++++++++++++++-+-+++++++++++++--++++++++++------++++++++--+--++++++++++++++++---++-+++++++++--+-+----++-+++++++++-"
2591	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 336; Minhom 60%; Maxhom 100%"
2592	%) /ali_dna_split3_2/
2593
2594	ali_dna_split3_3 %% (%
2595	bits %I "-"
2596	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 336; Minhom 60%; Maxhom 100%"
2597	%) /ali_dna_split3_3/
2598
2599	ali_dna_split3_4 %% (%
2600	bits %I "--+-+++++++++--++++++++++---++-+-+++-++-++--+-+++++--++---++++++---+++++--+-+++++++++++-++++++++++++++++++--++++++++++-+-+-++++++++++++++--++-+++++-++-++++++------------+++---"
2601	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 336; Minhom 60%; Maxhom 100%"
2602	%) /ali_dna_split3_4/
2603
2604	ali_dna_split3_5 %% (%
2605	bits %I "-"
2606	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 336; Minhom 60%; Maxhom 100%"
2607	%) /ali_dna_split3_5/
2608
2609	ali_prot_split_1 %% (%
2610	bits %I "----+-++-+----+++++++++++"
2611	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 112; Minhom 60%; Maxhom 100%"
2612	%) /ali_prot_split_1/
2613
2614	ali_prot_split_2 %% (%
2615	bits %I "--++---++--+++++--+++---++++--+++-+++-+-"
2616	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 112; Minhom 60%; Maxhom 100%"
2617	%) /ali_prot_split_2/
2618
2619	ali_prot_split_3 %% (%
2620	bits %I "++-+++--++-+--++-++++++--+++--++++-++++++----+-"
2621	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 112; Minhom 60%; Maxhom 100%"
2622	%) /ali_prot_split_3/
2623
2624	ali_overwrite_1 %% (%
2625	bits %I "------------++++-+++++++++-++++---+---++--++++++++++++++++++-+-+++++++++++++--++++++++++------++++++++--+--++++++++++++++++---++-+++++++++--+-+----++-+++++++++----+-+++++"
2626	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 336; Minhom 60%; Maxhom 100%"
2627	%) /ali_overwrite_1/
2628
2629	ali_overwrite_2 %% (%
2630	bits %I "++++--++++++++++---++-+-+++-++-++--+-+++++--++---++++++---+++++--+-+++++++++++-++++++++++++++++++--++++++++++-+-+-++++++++++++++--++-+++++-++-++++++------------+++----"
2631	_TYPE "[splitted] FMX: Filter by Maximum Frequency: Start 0; Stop 336; Minhom 60%; Maxhom 100%"
2632	%) /ali_overwrite_2/
2633
2634	%) /extended/
2635
2636	%) /extended_data/
2637
2638	configuration_data %% (%
2639	configuration %% (%
2640	name "default_configuration"
2641	top_area ""
2642	middle_area "\AGSAI-Maingroup\AFSAI:SAI's\ASCONSENSUS\ASMAX_FREQUENCY\ASMAX_FREQUENCY_GAPS\ASPOS_VAR_BY_PARSIMONY\ASmarkerline\AE\AE\AFMore Sequences\AE\AGEukarya EF-Tu\ALMucRace3\ALMucRacem\ALMucRace2\ALAbdGlauc\ALCddAlbic\AE\AGBacteria EF-Tu\ALCytLyti6\ALTaxOcell\ALBctFra12\ALStrCoel9\ALStrRamo3\AE"
2643	comment "This configuration will be OVERWRITTEN each time\nARB_EDIT4 is started w/o specifying a config!\n---\nTue Jul 4 11:05:47 2017: created for ARB_EDIT4 (tree=tree_prot_opti)\n"
2644	%) /configuration/
2645
2646	configuration %% (%
2647	name "marked"
2648	top_area ""
2649	middle_area "\AGSAI-Maingroup\AE\AFMore Sequences\AE\AGEF-Tu / EF-1a\AGEukarya EF-Tu\ALMucRace2\ALSacCere5\AE\AGBacteria EF-Tu\ALCytLyti6\ALStrRamo3\AE\AE"
2650	%) /configuration/
2651
2652	win0 %% (%
2653	%) /win0/
2654
2655	%) /configuration_data/
2656
2657	probe_collection %% (%
2658	match_weights %% (%
2659	%) /match_weights/
2660
2661	%) /probe_collection/
2662

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