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matrix.pro.tabbed.expected

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Last change on this file was 12957, checked in by westram, 10 years ago

adds test for distance matrix
- calculates matrices for
  - all sequence types
  - using 3 different transformations
    - autodetected for dna and pro
    - DI_TRANSFORMATION_FELSENSTEIN for rna (triggers overall frequency calculation)
- save matrices in all available formats
- covers all DIST-code-locations marked in [12942] (calculation using -defined transformation-matrix remains untested)
few minor fixes
- param constness
- free/delete mismatch
- useless access behind EOS (while printing NDS generated string in DI_SAVE_READABLE-mode)

File size: 1.0 KB

Line
1	CytLyti6, [ARB_6B3852E] TaxOcell, [ARB_21595EF] BctFra12, [ARB_4560B41C] StrRamo3, [ARB_30F12BA8] StrCoel9, [X77040] MucRacem, [ARB_5ADBD66E] MucRace2, [ARB_3627F120] MucRace3, [ARB_73CEEA74] AbdGlauc, [ARB_A706F312] CddAlbic, [ARB_10F3627F]
2	CytLyti6, [ARB_6B3852E] 0 1304 1372 949 768 891 540 1231 983 983
3	TaxOcell, [ARB_21595EF] 1304 0 1389 1350 1446 1557 1272 1538 551 1458
4	BctFra12, [ARB_4560B41C] 1372 1389 0 1168 1110 929 1316 873 911 1051
5	StrRamo3, [ARB_30F12BA8] 949 1350 1168 0 0,2 304 726 269 184 224
6	StrCoel9, [X77040] 768 1446 1110 0,2 0 465 779 343 267 303
7	MucRacem, [ARB_5ADBD66E] 891 1557 929 304 465 0 681 26,7 13,3 11,3
8	MucRace2, [ARB_3627F120] 540 1272 1316 726 779 681 0 593 474 634
9	MucRace3, [ARB_73CEEA74] 1231 1538 873 269 343 26,7 593 0 12,7 10,7
10	AbdGlauc, [ARB_A706F312] 983 551 911 184 267 13,3 474 12,7 0 0,0
11	CddAlbic, [ARB_10F3627F] 983 1458 1051 224 303 11,3 634 10,7 0,0 0
12
13	Minimum: 0.000000
14	Maximum: 1556.706920
15	Average: 665.230903

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