source: trunk/UNIT_TESTER/run/impexp/conv.SWISSPROT_2_GCG.expected

Last change on this file was 8607, checked in by westram, 13 years ago

merge from e4fix [8135] [8136] [8137] [8138] [8139] [8140] [8141] [8142] [8143] [8144] [8222]
(this revives the reverted patches [8129] [8130] [8131] [8132]; see [8133])

  • fixes
    • some free/delete mismatches
    • wrong definition of ORF objects (Level was no bit value)
    • amino consensus (failed for columns only containing 'C')
  • rename
    • AA_sequence_term → orf_term
    • ED4_sequence_terminal_basic → ED4_abstract_sequence_terminal
  • cleaned up hierarchy dumps
  • tweaked is_terminal()/to_terminal()
File size: 3.4 KB
Line 
1ID   MA32_HUMAN     STANDARD;      PRT;   282 AA.
2XX
3AC   Q07021;
4XX
5DT   01-FEB-1995 (Rel. 31, Created)
6DT   01-FEB-1995 (Rel. 31, Last sequence update)
7XX
8DE   COMPLEMENT COMPONENT 1, Q SUBCOMPONENT BINDING PROTEIN, MITOCHONDRIAL
9DE   PRECURSOR (GLYCOPROTEIN GC1QBP) (GC1Q-R PROTEIN) (HYALURONAN-BINDING
10DE   PROTEIN 1) (PRE-MRNA SPLICING FACTOR SF2, P32 SUBUNIT) (P33).
11XX
12KW   Mitochondrion; Transit peptide; 3D-structure.
13XX
14OS   Homo sapiens (Human).
15OC   No information.
16XX
17RN   [1]
18RP   SEQUENCE FROM N.A., AND SEQUENCE OF 74; 76-93 AND 208-216.
19RA   Honore B., Madsen P., Rasmussen H.H., Vandekerckhove J., Celis J.E.,
20RA   Leffers H.;
21RT   "Cloning and expression of a cDNA covering the complete coding region
22RT   of the P32 subunit of human pre-mRNA splicing factor SF2.";
23RL   Gene 134:283-287(1993).
24XX
25RN   [2]
26RP   SEQUENCE OF 5-282 FROM N.A., AND SEQUENCE OF 74-114.
27RA   Krainer A.R., Mayeda A., Kozak D., Binns G.;
28RT   "Functional expression of cloned human splicing factor SF2: homology
29RT   to RNA-binding proteins, U1 70K, and Drosophila splicing regulators.";
30RT   
31RL   Cell 66:383-394(1991).
32XX
33RN   [3]
34RP   SEQUENCE FROM N.A., AND PARTIAL SEQUENCE.
35RA   Ghebrehiwet B., Lim B.L., Peerschke E.I., Willis A.C., Reid K.B.;
36RT   "Isolation, cDNA cloning, and overexpression of a 33-kD cell surface
37RT   glycoprotein that binds to the globular 'heads' of C1q.";
38RL   J. Exp. Med. 179:1809-1821(1994).
39XX
40RN   [4]
41RP   X-RAY CRYSTALLOGRAPHY (2.25 ANGSTROMS).
42RA   Jiang J., Zhang Y., Krainer A.R., Xu R.-M.;
43RT   "Crystal structure of human p32, a doughnut-shaped acidic
44RT   mitochondrial matrix protein.";
45RL   Proc. Natl. Acad. Sci. U.S.A. 96:3572-3577(1999).
46XX
47DR   EMBL; L04636; AAA16315.1; -. EMBL; M69039; AAA73055.1; -. EMBL;
48DR   X75913; CAA53512.1; -. PIR; JT0762; JT0762. PIR; S44104; S44104. PDB;
49DR   1P32; 06-APR-99. MIM; 601269; -.
50XX
51CC   -!- FUNCTION: NOT KNOWN. BINDS TO THE GLOBULAR "HEADS" OF C1Q THUS
52CC   INHIBITING C1 ACTIVATION.
53CC   -!- SUBCELLULAR LOCATION: MITOCHONDRIAL MATRIX.
54CC   -!- SIMILARITY: BELONGS TO THE MAM33 FAMILY.
55CC   -!- CAUTION: WAS ORIGINALLY (REF.1 AND REF.2) THOUGHT TO BE A PRE-MRNA
56CC   SPLICING FACTOR THAT PLAYS A ROLE IN PREVENTING EXON SKIPPING,
57CC   ENSURING THE ACCURACY OF SPLICING AND REGULATING ALTERNATIVE
58CC   SPLICING.
59CC   ----------------------------------------------------------------------
60CC   ----
61CC   This SWISS-PROT entry is copyright. It is produced through a collabora
62CC   tion
63CC   between  the Swiss Institute of Bioinformatics  and the  EMBL outstati
64CC   on -
65CC   the European Bioinformatics Institute.  There are no  restrictions on
66CC   its
67CC   use  by  non-profit  institutions as long  as its content  is  in  no
68CC   way
69CC   modified and this statement is not removed.  Usage  by  and for commer
70CC   cial
71CC   entities requires a license agreement (See http://www.isb-sib.ch/annou
72CC   nce/
73or send an email to license@isb-sib.ch).
74CC   ----------------------------------------------------------------------
75CC   ----
76XX
77
78MA32_HUMAN  Length: 282  October 20, 2010  20:08:40  Type: N  Check: 6672  ..
79
80       1  MLPLLRCVPR VLGSSVAGLR AAAPASPFRQ LLQPAPRLCT RPFGLLSVRA
81
82      51  GSERRPGLLR PRGPCACGCG CGSLHTDGDK AFVDFLSDEI KEERKIQKHK
83
84     101  TLPKMSGGWE LELNGTEAKL VRKVAGEKIT VTFNINNSIP PTFDGEEEPS
85
86     151  QGQKVEEQEP ELTSTPNFVV EVIKNDDGKK ALVLDCHYPE DEVGQEDEAE
87
88     201  SDIFSIREVS FQSTGESEWK DTNYTLNTDS LDWALYDHLM DFLADRGVDN
89
90     251  TFADELVELS TALEHQEYIT FLEDLKSFVK SQ
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