source: trunk/UNIT_TESTER/run/impexp/conv.SWISSPROT_2_NEXUS.expected

Last change on this file was 8607, checked in by westram, 14 years ago

merge from e4fix [8135] [8136] [8137] [8138] [8139] [8140] [8141] [8142] [8143] [8144] [8222]
(this revives the reverted patches [8129] [8130] [8131] [8132]; see [8133])

  • fixes
    • some free/delete mismatches
    • wrong definition of ORF objects (Level was no bit value)
    • amino consensus (failed for columns only containing 'C')
  • rename
    • AA_sequence_term → orf_term
    • ED4_sequence_terminal_basic → ED4_abstract_sequence_terminal
  • cleaned up hierarchy dumps
  • tweaked is_terminal()/to_terminal()
File size: 898 bytes
Line 
1#NEXUS
2[! RDP - the Ribosomal Database Project, (Thu Sep 30 18:34:26 2010).]
3[! To get started, send HELP to rdp@info.mcs.anl.gov ]
4BEGIN DATA;
5   DIMENSIONS
6      NTAX =      1
7      NCHAR =    282
8      ;
9   FORMAT
10      LABELPOS = LEFT
11      MISSING = .
12      EQUATE = "~=.|><"
13      INTERLEAVE
14      DATATYPE = RNA
15      GAP = -
16      ;
17   OPTIONS
18      GAPMODE = MISSING
19      ;
20   MATRIX
21      'MA32_HUMA MLPLLRCVPR VLGSSVAGLR AAAPASPFRQ LLQPAPRLCT RPFGLLSVRA [1 - 50]
22
23      'MA32_HUMA GSERRPGLLR PRGPCACGCG CGSLHTDGDK AFVDFLSDEI KEERKIQKHK [51 - 100]
24
25      'MA32_HUMA TLPKMSGGWE LELNGTEAKL VRKVAGEKIT VTFNINNSIP PTFDGEEEPS [101 - 150]
26
27      'MA32_HUMA QGQKVEEQEP ELTSTPNFVV EVIKNDDGKK ALVLDCHYPE DEVGQEDEAE [151 - 200]
28
29      'MA32_HUMA SDIFSIREVS FQSTGESEWK DTNYTLNTDS LDWALYDHLM DFLADRGVDN [201 - 250]
30
31      'MA32_HUMA TFADELVELS TALEHQEYIT FLEDLKSFVK SQ [251 - 282]
32      ;
33ENDBLOCK;
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