source: trunk/UNIT_TESTER/run/pars/nucl-opti-all-NNI.tree.expected

Last change on this file was 16861, checked in by westram, 7 years ago
  • reintegrates 'unittest' into 'trunk'
    • fixed non-deterministic behavior of add-species:
      • 2 sequences in test-DB were identical (changed 1 bp)
      • AP_tree_edge cannot be used to store insert-positions (uses pair of AP_tree_nlen instead)
      • corrected some undefined behavior (results did depend on compiler version+flags):
        • general order of inserts was undefined
        • order of initial-insert was undefined (used by complete tree reconstruction)
    • bugs fixed:
      • not all possible insert-positions were tested
      • sometimes species were added at wrong positions
      • if multiple species were inserted at the same position, the following optimization
        • did modify topology
        • now optimizes all multi-inserts globally
        • at leaf-positions: includes the leaf (Note: this does not modify the original topology)
      • insert order now is "longest sequence first" (was "shortest sequence first")
    • fixed unwanted behavior when testing for content of generated files
  • adds: log:branches/unittest@16807:16860
File size: 523 bytes
Line 
1(
2 (
3  (
4   (
5    (
6     (
7      (
8       (
9        CloTyro3:1.000,
10        CloTyro4:0.027
11       ):0.056,
12       CloTyro2:0.013
13      ):0.000,
14      CloTyrob:0.013
15     ):0.339,
16     CloInnoc:0.397
17    ):0.193,
18    CloBifer:0.161
19   ):0.125,
20   (
21    CloButy2:0.000,
22    CloButyr:0.014
23   ):0.091
24  ):0.061,
25  (
26   CorGluta:0.288,
27   CytAquat:0.317
28  ):0.096
29 ):0.091,
30 (
31  (
32   (
33    CelBiazo:0.127,
34    CorAquat:0.089
35   ):0.028,
36   CurCitre:0.086
37  ):0.166,
38  (
39   CloCarni:0.118,
40   CloPaste:0.224
41  ):0.059
42 ):0.091);
Note: See TracBrowser for help on using the repository browser.