source: trunk/UNIT_TESTER/run/pars/nucl-opti-global.tree.expected

Last change on this file was 16861, checked in by westram, 7 years ago
  • reintegrates 'unittest' into 'trunk'
    • fixed non-deterministic behavior of add-species:
      • 2 sequences in test-DB were identical (changed 1 bp)
      • AP_tree_edge cannot be used to store insert-positions (uses pair of AP_tree_nlen instead)
      • corrected some undefined behavior (results did depend on compiler version+flags):
        • general order of inserts was undefined
        • order of initial-insert was undefined (used by complete tree reconstruction)
    • bugs fixed:
      • not all possible insert-positions were tested
      • sometimes species were added at wrong positions
      • if multiple species were inserted at the same position, the following optimization
        • did modify topology
        • now optimizes all multi-inserts globally
        • at leaf-positions: includes the leaf (Note: this does not modify the original topology)
      • insert order now is "longest sequence first" (was "shortest sequence first")
    • fixed unwanted behavior when testing for content of generated files
  • adds: log:branches/unittest@16807:16860
File size: 556 bytes
Line 
1(
2 (
3  (
4   (
5    (
6     (
7      (
8       (
9        CorAquat:0.063,
10        CurCitre:0.099
11       ):0.014,
12       CelBiazo:0.165
13      ):0.170,
14      CloPaste:0.211
15     ):0.030,
16     (
17      (
18       (
19        CloTyro2:0.013,
20        CloTyro4:0.040
21       ):0.000,
22       CloTyrob:0.000
23      ):0.476,
24      CloInnoc:0.342
25     ):0.180
26    ):0.118,
27    CloCarni:0.118
28   ):0.271,
29   (
30    CloButy2:0.000,
31    CloButyr:0.014
32   ):0.059
33  ):0.093,
34  CloBifer:0.204
35 ):0.068,
36 (
37  (
38   CloTyro3:0.877,
39   CorGluta:0.260
40  ):0.121,
41  CytAquat:0.302
42 ):0.068);
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