source: trunk @ 2986

Name Size Rev Age Author Last Change
../
 AISC 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 AISC_COM 2885   21 years westram - automatically create '.depends' if missing (needed for fresh build)
 AISC_MKPTPS 2903   21 years westram - inline functions are no longer included by default - added flag -i …
 ALEIO 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 ALIV3 2653   21 years westram - spell fix
 ARB_GDE 2933   21 years westram - assert GDE does not exit with error
 ARBDB 2942   21 years westram - GBT_create_alignment uses GBT_check_alignment_name
 ARBDB2 2743   21 years westram dependencies updated
 ARBDB_COMPRESS 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 ARBDBPP 2512   21 years westram - include fixes
 ARBDBS 2743   21 years westram dependencies updated
 AWDEMO 2653   21 years westram - spell fix
 AWT 2945   21 years westram - exit → bi_exit
 AWTC 2696   21 years westram GBS_strclose changed
 AWTI 2863   21 years westram depends updated
 BERGEY 2   25 years oldcode Initial revision
 bin 2944   21 years westram gene_probe → arb_gene_probe
 BUGEX 2653   21 years westram - spell fix
 CAT 2696   21 years westram GBS_strclose changed
 CHIP 2979   21 years westram * empty log message *
 CONSENSUS_TREE 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 CONVERTALN 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 DBSERVER 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 DIST 2863   21 years westram depends updated
 doc 2   25 years oldcode Initial revision
 DUMMYINC 2   25 years oldcode Initial revision
 EDIT 2696   21 years westram GBS_strclose changed
 EDIT4 2888   21 years westram - removed debugging messages
 EISPACK 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 etc 2   25 years oldcode Initial revision
 fig2dev 2049   22 years westram * empty log message *
 GDE 2936   21 years westram - changed error message
 GDEHELP 2977   21 years westram * empty log message *
 GENOM 2978   21 years meierh some bugs removed
 HELP_SOURCE 2986   21 years westram fixed link note
 ISLAND_HOPPING 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 JAVALIB 2   25 years oldcode Initial revision
 lib 2985   21 years westram label rename (sort→weighted)
 MERGE 2863   21 years westram depends updated
 MULTI_PROBE 2863   21 years westram depends updated
 NALIGNER 2731   21 years westram - changed user name detection
 NAMES 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 NAMES_COM 2912   21 years westram added .depends
 NIELS_F77 2   25 years oldcode Initial revision
 NTREE 2980   21 years westram depends for MAUS
 ORS_CGI 2731   21 years westram - changed user name detection
 ORS_COM 2912   21 years westram added .depends
 ORS_SERVER 2696   21 years westram GBS_strclose changed
 PARSIMONY 2963   21 years westram - zoom.bitmap → pzoom.bitmap
 PERL2ARB 2300   22 years westram - added XS interface for GB_find (because mode needs translation)
 PERL_SCRIPTS 2976   21 years westram added MAUS interface prototype
 PHYLO 2863   21 years westram depends updated
 PRIMER_DESIGN 2817   21 years westram - GEN_is_genom_db → GEN_is_genome_db
 PROBE 2982   21 years westram - reduced MIN_PROBE_LENGTH (8→6)
 PROBE_COM 2912   21 years westram added .depends
 PROBE_DESIGN 2984   21 years westram - fixed reverse-complement bug (headline parsing)
 PROBE_SERVER 2801   21 years westram * empty log message *
 PROBE_SET 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 PROBE_WEB 2633   21 years westram - uses Toolkit for messages
 READSEQ 2682   21 years westram - removed broken chars
 SECEDIT 2963   21 years westram - zoom.bitmap → pzoom.bitmap
 SEER 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 SEQ_QUALITY 2647   21 years huberj * empty log message *
 SERVERCNTRL 2795   21 years westram - debugging messages - reduced sleep values when waiting for PT- or …
 SH 2768   21 years westram - added new parameters needed for rate variation
 SOURCE_TOOLS 2856   21 years westram - added WINDOW/aw_global.hxx
 STAT 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 TEMPLATES 2441   21 years westram - added parseBool
 TEST 2963   21 years westram - zoom.bitmap → pzoom.bitmap
 TESTAWT 2963   21 years westram - zoom.bitmap → pzoom.bitmap
 TESTVECTORFONT 2963   21 years westram - zoom.bitmap → pzoom.bitmap
 TOOLS 2767   21 years westram - resets branchlengths to 0.1 if values were interpreted as bootstrap …
 TREE_COMPRESS 2696   21 years westram GBS_strclose changed
 TREEGEN 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 TRS 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 util 2905   21 years westram - excluded .genmenu
 WETC 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 WINDOW 2960   21 years westram - help files are now also searched in HELP_SOURCE/genhelp
 XML 2338   22 years westram fixed and reformatted dependencies (using fix_depends.pl)
 XML_IMPORT 2337   22 years westram - dependency formatting now done by fix_depends.pl
.cvsignore 107 bytes 2892   21 years westram - added arbsrc.lst
arb_CHANGES.txt 5.1 KB 2612   21 years meierh probe match enhanced
arb_DEBUG.txt 1.2 KB 578   23 years westram * empty log message *
arb_install.sh 13.0 KB 1224   22 years westram made more clear, that user has to do some config
arb_INSTALL.txt 1.8 KB 2314   22 years westram * empty log message *
arb_LICENSE.txt 12.7 KB 2870   21 years westram - added licenses for treepuzzle, molphy + readseq
arb_MENU_CHANGES.txt 17.4 KB 1155   22 years westram * empty log message *
arb_README.txt 10.3 KB 2600   21 years westram * empty log message *
arb_README_gcc3.2.txt 870 bytes 1549   22 years westram * empty log message *
arb_src_install 699 bytes 349   24 years westram should be done by ARB Makefile
config.makefile.template 1.3 KB 2651   21 years westram changed comments
demo.arb 79.6 KB 695   23 years westram new demo db containing colored species
Doxyfile 7.2 KB 2529   21 years westram - added *.java files
load 699 bytes 2   25 years oldcode Initial revision
log 0 bytes 2   25 years oldcode Initial revision
Makefile 39.3 KB 2943   21 years westram - gene_probe → arb_gene_probe
README 2.0 KB 1407   22 years westram * README: - mentioned mac version
timestamp 0 bytes 2   25 years oldcode Initial revision
zcat 64.1 KB 2   25 years oldcode Initial revision
  • Property svn:ignore set to
    ARB_SOURCE_DOC
    ChangeLog
    arb.tgz
    arbsrc.lst
    arbsrc_*.tgz
    config.makefile
    demo.ARF
    demo.a[0-9][0-9]
    do_core
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