../
|
AISC
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
AISC_COM
|
|
2885
|
21 years
|
westram |
- automatically create '.depends' if missing (needed for fresh build)
|
AISC_MKPTPS
|
|
2903
|
21 years
|
westram |
- inline functions are no longer included by default
- added flag -i …
|
ALEIO
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
ALIV3
|
|
2653
|
21 years
|
westram |
- spell fix
|
ARB_GDE
|
|
2933
|
21 years
|
westram |
- assert GDE does not exit with error
|
ARBDB
|
|
2942
|
21 years
|
westram |
- GBT_create_alignment uses GBT_check_alignment_name
|
ARBDB2
|
|
2743
|
21 years
|
westram |
dependencies updated
|
ARBDB_COMPRESS
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
ARBDBPP
|
|
2512
|
21 years
|
westram |
- include fixes
|
ARBDBS
|
|
2743
|
21 years
|
westram |
dependencies updated
|
AWDEMO
|
|
2653
|
21 years
|
westram |
- spell fix
|
AWT
|
|
2945
|
21 years
|
westram |
- exit → bi_exit
|
AWTC
|
|
2696
|
21 years
|
westram |
GBS_strclose changed
|
AWTI
|
|
2863
|
21 years
|
westram |
depends updated
|
BERGEY
|
|
2
|
25 years
|
oldcode |
Initial revision
|
bin
|
|
2944
|
21 years
|
westram |
gene_probe → arb_gene_probe
|
BUGEX
|
|
2653
|
21 years
|
westram |
- spell fix
|
CAT
|
|
2696
|
21 years
|
westram |
GBS_strclose changed
|
CHIP
|
|
2979
|
21 years
|
westram |
* empty log message *
|
CONSENSUS_TREE
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
CONVERTALN
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
DBSERVER
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
DIST
|
|
2863
|
21 years
|
westram |
depends updated
|
doc
|
|
2
|
25 years
|
oldcode |
Initial revision
|
DUMMYINC
|
|
2
|
25 years
|
oldcode |
Initial revision
|
EDIT
|
|
2696
|
21 years
|
westram |
GBS_strclose changed
|
EDIT4
|
|
2888
|
21 years
|
westram |
- removed debugging messages
|
EISPACK
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
etc
|
|
2
|
25 years
|
oldcode |
Initial revision
|
fig2dev
|
|
2049
|
22 years
|
westram |
* empty log message *
|
GDE
|
|
2936
|
21 years
|
westram |
- changed error message
|
GDEHELP
|
|
2977
|
21 years
|
westram |
* empty log message *
|
GENOM
|
|
2978
|
21 years
|
meierh |
some bugs removed
|
HELP_SOURCE
|
|
2986
|
21 years
|
westram |
fixed link note
|
ISLAND_HOPPING
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
JAVALIB
|
|
2
|
25 years
|
oldcode |
Initial revision
|
lib
|
|
2985
|
21 years
|
westram |
label rename (sort→weighted)
|
MERGE
|
|
2863
|
21 years
|
westram |
depends updated
|
MULTI_PROBE
|
|
2863
|
21 years
|
westram |
depends updated
|
NALIGNER
|
|
2731
|
21 years
|
westram |
- changed name detection
|
NAMES
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
NAMES_COM
|
|
2912
|
21 years
|
westram |
added .depends
|
NIELS_F77
|
|
2
|
25 years
|
oldcode |
Initial revision
|
NTREE
|
|
2980
|
21 years
|
westram |
depends for MAUS
|
ORS_CGI
|
|
2731
|
21 years
|
westram |
- changed name detection
|
ORS_COM
|
|
2912
|
21 years
|
westram |
added .depends
|
ORS_SERVER
|
|
2696
|
21 years
|
westram |
GBS_strclose changed
|
PARSIMONY
|
|
2963
|
21 years
|
westram |
- zoom.bitmap → pzoom.bitmap
|
PERL2ARB
|
|
2300
|
22 years
|
westram |
- added XS interface for GB_find (because mode needs translation)
|
PERL_SCRIPTS
|
|
2976
|
21 years
|
westram |
added MAUS interface prototype
|
PHYLO
|
|
2863
|
21 years
|
westram |
depends updated
|
PRIMER_DESIGN
|
|
2817
|
21 years
|
westram |
- GEN_is_genom_db → GEN_is_genome_db
|
PROBE
|
|
2982
|
21 years
|
westram |
- reduced MIN_PROBE_LENGTH (8→6)
|
PROBE_COM
|
|
2912
|
21 years
|
westram |
added .depends
|
PROBE_DESIGN
|
|
2984
|
21 years
|
westram |
- fixed reverse-complement (headline parsing)
|
PROBE_SERVER
|
|
2801
|
21 years
|
westram |
* empty log message *
|
PROBE_SET
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
PROBE_WEB
|
|
2633
|
21 years
|
westram |
- uses Toolkit for messages
|
READSEQ
|
|
2682
|
21 years
|
westram |
- removed broken chars
|
SECEDIT
|
|
2963
|
21 years
|
westram |
- zoom.bitmap → pzoom.bitmap
|
SEER
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
SEQ_QUALITY
|
|
2647
|
21 years
|
huberj |
* empty log message *
|
SERVERCNTRL
|
|
2795
|
21 years
|
westram |
- debugging messages
- reduced sleep values when waiting for PT- or …
|
SH
|
|
2768
|
21 years
|
westram |
- added new parameters needed for rate variation
|
SOURCE_TOOLS
|
|
2856
|
21 years
|
westram |
- added WINDOW/aw_global.hxx
|
STAT
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
TEMPLATES
|
|
2441
|
21 years
|
westram |
- added parseBool
|
TEST
|
|
2963
|
21 years
|
westram |
- zoom.bitmap → pzoom.bitmap
|
TESTAWT
|
|
2963
|
21 years
|
westram |
- zoom.bitmap → pzoom.bitmap
|
TESTVECTORFONT
|
|
2963
|
21 years
|
westram |
- zoom.bitmap → pzoom.bitmap
|
TOOLS
|
|
2767
|
21 years
|
westram |
- resets branchlengths to 0.1 if values were interpreted as bootstrap …
|
TREE_COMPRESS
|
|
2696
|
21 years
|
westram |
GBS_strclose changed
|
TREEGEN
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
TRS
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
util
|
|
2905
|
21 years
|
westram |
- excluded .genmenu
|
WETC
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
WINDOW
|
|
2960
|
21 years
|
westram |
- help files are now also searched in HELP_SOURCE/genhelp
|
XML
|
|
2338
|
22 years
|
westram |
fixed and reformatted dependencies (using fix_depends.pl)
|
XML_IMPORT
|
|
2337
|
22 years
|
westram |
- dependency formatting now done by fix_depends.pl
|
.cvsignore
|
107 bytes
|
2892
|
21 years
|
westram |
- added arbsrc.lst
|
arb_CHANGES.txt
|
5.1 KB
|
2612
|
21 years
|
meierh |
probe match enhanced
|
arb_DEBUG.txt
|
1.2 KB
|
578
|
23 years
|
westram |
* empty log message *
|
arb_install.sh
|
13.0 KB
|
1224
|
22 years
|
westram |
made more clear, that has to do some config
|
arb_INSTALL.txt
|
1.8 KB
|
2314
|
22 years
|
westram |
* empty log message *
|
arb_LICENSE.txt
|
12.7 KB
|
2870
|
21 years
|
westram |
- added licenses for treepuzzle, molphy + readseq
|
arb_MENU_CHANGES.txt
|
17.4 KB
|
1155
|
22 years
|
westram |
* empty log message *
|
arb_README.txt
|
10.3 KB
|
2600
|
21 years
|
westram |
* empty log message *
|
arb_README_gcc3.2.txt
|
870 bytes
|
1549
|
22 years
|
westram |
* empty log message *
|
arb_src_install
|
699 bytes
|
349
|
24 years
|
westram |
should be done by ARB Makefile
|
config.makefile.template
|
1.3 KB
|
2651
|
21 years
|
westram |
changed comments
|
demo.arb
|
79.6 KB
|
695
|
23 years
|
westram |
new demo db containing colored species
|
Doxyfile
|
7.2 KB
|
2529
|
21 years
|
westram |
- added *.java files
|
load
|
699 bytes
|
2
|
25 years
|
oldcode |
Initial revision
|
log
|
0 bytes
|
2
|
25 years
|
oldcode |
Initial revision
|
Makefile
|
39.3 KB
|
2943
|
21 years
|
westram |
- gene_probe → arb_gene_probe
|
README
|
2.0 KB
|
1407
|
22 years
|
westram |
* README: - mentioned mac version
|
timestamp
|
0 bytes
|
2
|
25 years
|
oldcode |
Initial revision
|
zcat
|
64.1 KB
|
2
|
25 years
|
oldcode |
Initial revision
|