Changes between Version 8 and Version 9 of Ticket #663


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Timestamp:
Sep 30, 2015, 11:53:03 AM (10 years ago)
Author:
westram
Comment:

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  • TabularUnified Ticket #663 – Description

    v8 v9  
    1515Current differences in detail:
    1616||'''Pos'''||'''SAI'''||'''Group'''||'''Col.content'''||'''Reason'''||
     17||  12 || M || Y || 1x'Y' || 'Y' is correct ||
     18
     19Current differences with gaps=on:
     20||'''Pos'''||'''SAI'''||'''Group'''||'''Col.content'''||'''Reason'''||
     21|| 115 || g || s || 14x'G'+10x'C'+3x'U' || C(37%)+G(51%)=S; 24/41=58%=>lowercase ||
     22|| 120 || a || w || 14x'A'+3x'C'+6x'G'+9x'U' || A(43%)+U(28%)=W; 23/41=56%=>lowercase ||
     23|| 153 || G || g || 23x'G' || 23/41=56%=>lowercase ||
     24|| 159 || R || r || 13x'G'+8x'A'+1x'U'+1x'C' || G(56%)+A(34%)=R; 21/41=51%=>lowercase ||
     25
     26More facts:
     27 * if consensus SAI is calculated with 'gaps=on'
     28   * the differences listed above disappear (i.e. EDIT4 group consensus seems to use gaps=on implicitely
     29   * starting with pos=154 several positions are uppercase in SAI and lowercase in EDIT4
     30 * make sure remark of {{{CloTyro2}}} is ignored in method 1!
     31----
     32
     33Differences before [14387]:
     34||'''Pos'''||'''SAI'''||'''Group'''||'''Col.content'''||'''Reason'''||
    1735||   6 || G || g || 14x'G'+3x'A'+1x'U' || G(77%) => 'G' ||
    1836||  12 || M || n || 1x'Y' || both wrong, should be 'Y' ||
    … …  
    2240|| 115 || S || s || 14x'G'+10x'C'+3x'U' || C(37%)+G(51%)=S; 37+51=88%=>uppercase ||
    2341
    24 More facts:
    25  * if consensus SAI is calculated with 'gaps=on'
    26    * the differences listed above disappear (i.e. EDIT4 group consensus seems to use gaps=on implicitely
    27    * starting with pos=154 several positions are uppercase in SAI and lowercase in EDIT4
    28  * make sure remark of {{{CloTyro2}}} is ignored in method 1!
    29 ----
    3042Differences before [14319]:
    3143||'''Pos'''||'''SAI'''||'''Group'''||'''Col.content'''||'''Reason'''||