Changes between Version 2 and Version 3 of Ticket #743


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Timestamp:
Mar 7, 2017, 12:21:55 PM (8 years ago)
Author:
westram
Comment:

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  • TabularUnified Ticket #743 – Description

    v2 v3  
     1== Specification: ==
     2
     3 1. load ARB database
     4 2. filter sequences by existing SAI(s)
     5 3. export remaining columns of all sequences to FASTA file
     6    * skip sequences with =< {{{--minlength}}} base positions
     7    * logged skipped species to stderr (using field 'name')
     8
    19== CLI : ==
    210
    … …  
    2432 * AND: will export all columns where PV1 is >= 4 '''and''' PV2 is >= 6
    2533
    26 == Specification: ==
    27 
    28  * always export all sequences from a DB
    29  * filter sequences by existing SAI
    30  * write result to FASTA flatfile
    31  * log sequences skipped due to {{{--minlength}}} restriction (-> stdout)