source: branches/gcc

Name Size Rev Age Author Last Change
../
AISC ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
AISC_COM ​ 19955   5 days westram * fix warnings in arb code (DEBUG mode): - transposed arguments in …
AISC_MKPTPS ​ 19810   2 months westram * reintegrates 'unittest' into 'gcc' - fixes #874 * adds: …
ARB_GDE ​ 19810   2 months westram * reintegrates 'unittest' into 'gcc' - fixes #874 * adds: …
ARBDB ​ 19959   5 days westram * remove pre-C++14 code.
AWTC ​ 19924   13 days westram * mark code failing with clang 21.
AWTI ​ 19654   6 months westram * reintegrates 'macros' into 'trunk' - improves program …
bin ​ 19922   13 days westram * remove naligner
BINDEP ​ 19937   6 days westram * fix lib dependencies: remove duplicated dependencies.
BINDINGS ​ 18729   5 years westram * eliminate trailing whitespace from Makefiles.
BUGEX ​ 18730   5 years westram * remove trailing whitespace from c source.
CONSENSUS_TREE ​ 19913   3 weeks westram * full update from 'trunk' into 'gcc' * adds: - …
CONVERTALN ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
CORE ​ 19959   5 days westram * remove pre-C++14 code.
DBSERVER ​ 19613   7 months westram * reintegrates 'lib' into 'trunk' - replace dynamic library …
DIST ​ 19913   3 weeks westram * full update from 'trunk' into 'gcc' * adds: - …
doc ​ 6141   17 years westram * spellchecked all (phew)
EDIT4 ​ 19935   6 days westram * fix warnings in DEBUG mode with gcc-11.x (arb code): - template …
EISPACK ​ 19613   7 months westram * reintegrates 'lib' into 'trunk' - replace dynamic library …
etc ​ 6141   17 years westram * spellchecked all (phew)
GDE ​ 19953   5 days westram * fix warnings in GDE tools (DEBUG mode) - [-Waddress] …
GDEHELP ​ 19810   2 months westram * reintegrates 'unittest' into 'gcc' - fixes #874 * adds: …
GENOM ​ 19928   13 days westram * remove code no longer required (pre-6.x gcc). * remove references …
GENOM_IMPORT ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
GFX ​ 12766   12 years epruesse attempt at building an icon for ARB databases
GL ​ 19926   13 days westram * avoid various 'check..'-targets print interleaved to console by …
HEADERLIBS ​ 19920   3 weeks westram * full update from 'trunk' into 'gcc' * adds: log:trunk@19917:19919
HELP_SOURCE ​ 19926   13 days westram * avoid various 'check..'-targets print interleaved to console by …
ISLAND_HOPPING ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
lib ​ 19922   13 days westram * remove naligner
MERGE ​ 19731   4 months westram * reintegrates 'species' into 'trunk' - provides species …
MULTI_PROBE ​ 19955   5 days westram * fix warnings in arb code (DEBUG mode): - transposed arguments in …
NAMES ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
NAMES_COM ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
NTREE ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
PARSIMONY ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
PERL2ARB ​ 19954   5 days westram * suppress warnings in arb code - suppress false-positive …
PERL_SCRIPTS ​ 19733   4 months westram * fix perl compatibility script: - close database from script. …
PERLTOOLS ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
PHYLO ​ 19952   5 days westram * refactor PHYLO: - eliminate unused, always-NULp result. …
PRIMER_DESIGN ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
PROBE ​ 19935   6 days westram * fix warnings in DEBUG mode with gcc-11.x (arb code): - template …
PROBE_COM ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
PROBE_DESIGN ​ 19924   13 days westram * mark code failing with clang 21.
PROBE_SET ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
READSEQ ​ 19953   5 days westram * fix warnings in GDE tools (DEBUG mode) - [-Waddress] …
RNA3D ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
RNACMA ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
SECEDIT ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
SEQ_QUALITY ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
SERVERCNTRL ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
SH ​ 19708   4 months westram * update doc+gui: - avoid terms "ARB_NT" (=former name of main arb …
SL ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
SOURCE_TOOLS ​ 19945   5 days westram * allow gcc-15.2 - skip failing builds of several tools: AxML …
STAT ​ 19935   6 days westram * fix warnings in DEBUG mode with gcc-11.x (arb code): - template …
TEMPLATES ​ 19959   5 days westram * remove pre-C++14 code.
TOOLS ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
TREEGEN ​ 19613   7 months westram * reintegrates 'lib' into 'trunk' - replace dynamic library …
UNIT_TESTER ​ 19960   5 days westram * raise error in now unexpected situation - formerly accepted for …
util ​ 19532   11 months westram * reintegrates 'help' into 'trunk' - tweak arb documentation: …
WETC ​ 19613   7 months westram * reintegrates 'lib' into 'trunk' - replace dynamic library …
WINDOW ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
XML ​ 19958   5 days westram * remove pre-C++11 code. * fix include of stringize.h + …
.gitignore 429 bytes ​ 19245   4 years westram * reintegrates 'sina' into 'trunk' - build/deliver sina together …
arb_CHANGES.txt 28.4 KB ​ 19951   5 days westram * allow gcc-16.1
arb_install.sh 20.7 KB ​ 19708   4 months westram * update doc+gui: - avoid terms "ARB_NT" (=former name of main arb …
arb_INSTALL.txt 6.0 KB ​ 19492   3 years westram * mention libgomp1 (required by FastTreeMP)
arb_LICENSE.txt 10.7 KB ​ 19575   8 months westram * reintegrates 'help' into 'trunk' - preformatted text gets …
arb_OS_X.txt 5.3 KB ​ 18781   5 years westram * reintegrates 'help' into 'trunk' - relocate help sources * …
arb_OS_X_MacPorts.txt 370 bytes ​ 6288   17 years westram * include ALL arb_*.txt into release tarball * renamed …
arb_PUBLIB_LICENSE.txt 2.2 KB ​ 15367   10 years epruesse revert … misunderstood the meaning of the file name …
arb_README.txt 7.1 KB ​ 19708   4 months westram * update doc+gui: - avoid terms "ARB_NT" (=former name of main arb …
arb_UBUNTU.txt 1.1 KB ​ 19428   3 years westram * add dependencies to make + time. * call apt-get …
arbsrc_README.txt 210 bytes ​ 6288   17 years westram * include ALL arb_*.txt into release tarball * renamed …
arbsrc_README_gcc.txt 702 bytes ​ 19927   13 days westram * remove all gcc versions < 6 from list of allowed versions. - …
config.makefile.template 1.9 KB ​ 19245   4 years westram * reintegrates 'sina' into 'trunk' - build/deliver sina together …
demo.arb 102.1 KB ​ 16239   9 years westram * change default tree back to first tree
Doxyfile 104.7 KB ​ 17645   7 years westram update doxygen docs: - updated obsolete setting using "doxygen -u". - …
Makefile 86.9 KB ​ 19959   5 days westram * remove pre-C++14 code.
README 28 bytes ​ 18702   5 years westram * full update from child 'stable' into 'trunk' * adds: …
  • Property svn:ignore set to
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