source: branches/port5

Name Size Rev Age Author Last Change
../
 AISC ​ 8525   13 years westram (partial) merge from trunk [8322] [8324] [8325] [8326] [8327] * …
 AISC_COM ​ 6778   15 years westram - merged [6377]+[6465]
 AISC_MKPTPS ​ 5968   16 years westram * new flag -w to aisc_mkpt (add include wrapper) * uniform style for …
 ALIV3 ​ 5894   16 years westram * reactivated original GB_close * removed GB_exit (use GB_close) * …
 ARB_GDE ​ 6143   16 years westram * backport [6141] (parts changing code, but only strings and comments)
 ARBDB ​ 17622   6 years westram * port arb 5.5 to gcc 5.5 :) - fix strange inline issue
 ARBDB2 ​ 6020   16 years westram * splitted adtools.c into multiple files (no code change)
 ARBDBPP ​ 6143   16 years westram * backport [6141] (parts changing code, but only strings and comments)
 ARBDBS ​ 6020   16 years westram * splitted adtools.c into multiple files (no code change)
 AWT ​ 8301   13 years westram * fixed some realigner bugs - when species did not contain …
 AWTC ​ 6127   16 years westram - added some comment-pointers about code-dependencies
 AWTI ​ 9164   12 years westram * compile fix for gcc 4.7 (thx to Christian Quast) * merge [8912] …
 bin ​ 17622   6 years westram * port arb 5.5 to gcc 5.5 :) - fix strange inline issue
 BUGEX ​ 5675   16 years westram - removed automatic timestamps (the best they were good for, were …
 CONSENSUS_TREE ​ 6143   16 years westram * backport [6141] (parts changing code, but only strings and comments)
 CONVERTALN ​ 5968   16 years westram * new flag -w to aisc_mkpt (add include wrapper) * uniform style for …
 DBSERVER ​ 5872   16 years westram * Changed variable transfer to sub-makefiles - most variables are …
 DIST ​ 6143   16 years westram * backport [6141] (parts changing code, but only strings and comments)
 doc ​ 6142   16 years westram * backport [6141] (parts not affecting code at all, i.e. helpfiles, …
 EDIT ​ 6100   16 years westram * fix warning "format not a string literal and no format arguments" …
 EDIT4 ​ 6358   15 years westram - backport [6353], [6354] and [6357]
 EISPACK ​ 5471   17 years westram - ignore Makefile.bak and TAGS
 etc ​ 6142   16 years westram * backport [6141] (parts not affecting code at all, i.e. helpfiles, …
 GDE ​ 8777   13 years epruesse merge gcc 4.6 fixes from r8240
 GDEHELP ​ 9163   12 years westram * report suppressed failure when creating ARB_GDEmenus (first command …
 GENOM ​ 6143   16 years westram * backport [6141] (parts changing code, but only strings and comments)
 GENOM_IMPORT ​ 6104   16 years westram * use GB_warningf instead of GB_warning(GBS_global_string) * same for …
 GL ​ 9153   12 years westram merge from trunk [8664] [9004] [9120]
 HELP_SOURCE ​ 8525   13 years westram (partial) merge from trunk [8322] [8324] [8325] [8326] [8327] * …
 ISLAND_HOPPING ​ 5968   16 years westram * new flag -w to aisc_mkpt (add include wrapper) * uniform style for …
 JAVALIB ​ 2   24 years oldcode Initial revision
 lib ​ 7486   14 years westram based on a …
 MERGE ​ 6121   16 years westram * fixed macro ids for merge species window
 MULTI_PROBE ​ 6156   16 years westram * backport [6155]
 NALIGNER ​ 5894   16 years westram * reactivated original GB_close * removed GB_exit (use GB_close) * …
 NAMES ​ 6084   16 years westram * name servers with add.field have to be started with …
 NAMES_COM ​ 8525   13 years westram (partial) merge from trunk [8322] [8324] [8325] [8326] [8327] * …
 NTREE ​ 8301   13 years westram * fixed some realigner bugs - when species did not contain …
 PARSIMONY ​ 6341   15 years westram - backport [6340]
 PERL2ARB ​ 8635   13 years westram * merged OSX patches into [6192] (thx to Matt)
 PERL_SCRIPTS ​ 7738   14 years westram - merge from trunk [7737]
 PGT ​ 5825   16 years westram * replaced GB_entry/GB_create/GB_search+GB_read_XXX by GBT_read_XXX * …
 PHYLO ​ 6072   16 years westram * added missing and fixed broken hotkeys
 PRIMER_DESIGN ​ 6100   16 years westram * fix warning "format not a string literal and no format arguments" …
 PROBE ​ 8215   13 years westram - guard truncated probe match against misunderstandings - increase …
 PROBE_COM ​ 8525   13 years westram (partial) merge from trunk [8322] [8324] [8325] [8326] [8327] * …
 PROBE_DESIGN ​ 8215   13 years westram - guard truncated probe match against misunderstandings - increase …
 PROBE_SET ​ 5855   16 years westram * final followup to [5854] - GB_get_error() → GB_await_error() …
 ptpan ​ 6419   15 years westram - backport [6418]
 READSEQ ​ 6287   15 years westram - backport [6285] [6286]
 RNA3D ​ 8635   13 years westram * merged OSX patches into [6192] (thx to Matt)
 SECEDIT ​ 6258   15 years westram - backport [6256]
 SEQ_QUALITY ​ 6143   16 years westram * backport [6141] (parts changing code, but only strings and comments)
 SERVERCNTRL ​ 6100   16 years westram * fix warning "format not a string literal and no format arguments" …
 SH ​ 8525   13 years westram (partial) merge from trunk [8322] [8324] [8325] [8326] [8327] * …
 SL ​ 6287   15 years westram - backport [6285] [6286]
 SOURCE_TOOLS ​ 9167   12 years westram Auto version upgrade to 5.5 by devel@…
 STAT ​ 6010   16 years westram * ST_ML * in case of error (while loading tree), set tree variables …
 TEMPLATES ​ 6521   15 years westram * added COMPILE_ASSERT * assert correct pointersizes for PT-server
 TOOLS ​ 6287   15 years westram - backport [6285] [6286]
 TREEGEN ​ 5471   17 years westram - ignore Makefile.bak and TAGS
 util ​ 9154   12 years westram merge from dev [7782]
 WETC ​ 5901   16 years westram - AW_BOOL → bool
 WINDOW ​ 6589   15 years westram - backport [6588]
 XML ​ 5709   16 years westram - made depends for [5708]
 XML_IMPORT ​ 5900   16 years westram - fixed senseless warning
!BRANCH_STATE 2.1 KB ​ 8213   13 years westram * update
arb_CHANGES.txt 10.8 KB ​ 9165   12 years westram * changes for arb_5.5
arb_DEBUG.txt 1.2 KB ​ 578   23 years westram * empty log message *
arb_install.sh 14.3 KB ​ 6351   15 years westram - backport [6350]
arb_INSTALL.txt 3.6 KB ​ 7132   14 years westram - merged [7131] to stable
arb_LICENSE.txt 10.5 KB ​ 8203   13 years westram - removed molphy (protml)
arb_OS_X.txt 5.5 KB ​ 6215   16 years westram - merged [6214]
arb_OS_X_MacPorts.txt 370 bytes ​ 6289   15 years westram - backport [6288]
arb_README.txt 5.9 KB ​ 8211   13 years westram
arb_UBUNTU.txt 1.2 KB ​ 8207   13 years westram - 10.04
arbsrc_README.txt 210 bytes ​ 6289   15 years westram - backport [6288]
arbsrc_README_gcc.txt 1.4 KB ​ 6289   15 years westram - backport [6288]
config.makefile.template 1.5 KB ​ 6163   16 years westram * backport [6161] + [6162]
demo.arb 78.3 KB ​ 6195   16 years westram * repaired, tree and compression optimized
Doxyfile 7.2 KB ​ 6142   16 years westram * backport [6141] (parts not affecting code at all, i.e. helpfiles, …
Makefile 39.2 KB ​ 17623   6 years westram - remove useless comment
README 717 bytes ​ 5390   17 years westram - TAB-Ex
  • Property svn:ignore set to
    *.last_gcc
    ARB_SOURCE_DOC
    ChangeLog
    INCLUDE
    LIBLINK
    MAKEBIN
    PERL5
    arb.tgz
    arbsrc.lst
    arbsrc_*.tgz
    compile.log
    config.makefile
    demo.ARF
    demo.a[0-9][0-9]
    do_core
    TAGS
    .cdtproject
    .project
    .settings
    arbsrc.tgz
  • Property svn:mergeinfo set to (toggle deleted branches)
    /trunk7491,​8240,​8322,​8324-8327,​8664,​8806-8808,​8912,​9004,​9120
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