source: branches/port5/HELP_SOURCE/oldhelp/e4_search.hlp

Last change on this file was 6142, checked in by westram, 16 years ago
  • backport [6141] (parts not affecting code at all, i.e. helpfiles, figs, ..)
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 2.8 KB
Line 
1#Please insert up references in the next lines (line starts with keyword UP)
2UP      arb.hlp
3UP      glossary.hlp
4
5#Please insert subtopic references  (line starts with keyword SUB)
6#SUB    subtopic.hlp
7
8# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}
9
10#************* Title of helpfile !! and start of real helpfile ********
11TITLE           Search
12
13OCCURRENCE      ARB_EDIT4/Edit/Search
14
15DESCRIPTION     Search
16
17                Search patterns
18
19                        In the text field you can enter multiple search patterns.
20                        Different patterns are separated by newlines or commas.
21
22                        '?' is treated as single letter wildcard
23
24                        '#' is an end-of-line comment
25
26                                Text written behind # will not be used for search.
27                                Instead this text will be displayed in the message
28                                window when you position your cursor on a found
29                                pattern.
30
31                Mark species with matches
32
33                        Marks all species which match one of the current search patterns.
34                        Does not unmark rest on species.
35
36                Last/Next
37
38                        Jumps to the last/next occurrence of any of the given patterns.
39                        You can repeat your last search by pressing CTRL-S.
40
41                Show ?
42
43                        If checked, the found parts are shown in different
44                        background colors (defined at Properties/Data Search)
45
46                        If the different search patterns overlap, they are shown
47                        in the following order:
48
49                                User (shown above all others)
50                                Probe
51                                Primer (shown below all other)
52
53                Open folded?
54
55                        If checked, the Last/Next-Button will open folded groups,
56                        to jump to the next occurrence. Otherwise search will jump
57                        over folded groups.
58
59                Auto jump?
60
61                        If checked, the cursor will automatically jump to the
62                        nearest occurrence, if you change the search pattern or
63                        other search parameters.
64
65                Ignore gaps in sequence?
66
67                        If checked, gaps in sequence will be ignored.
68                        (ACGU will find A-CG-U, AC---GU, ...)
69
70                Ignore gaps in pattern?
71
72                        If checked, gaps in the search pattern will be ignored.
73                        (A-CG-U, AC---GU, ... will find ACGU)
74
75                Treat T and U as match?
76
77                        If checked, T and U will be treated as equal.
78                        (ACGU will find ACGT and vice versa)
79
80                Ignore case?
81
82                        If checked, a and A, c and C, ... are treated as
83                        equal (aCGu will find ACGU, AcgU, acgu, ...)
84
85                Search for complement?
86
87                        If checked, search will go as well for complemented
88                        patterns.
89
90                Search for reverse?
91
92                        If checked, search will go as well for reversed patterns.
93
94                Exact!
95
96                        If checked, search will only go for the given combination
97                        of 'complement' and 'reverse'.
98
99                        Example: If 'Exact', 'complement' and 'reverse' are checked,
100                                 search will go only for complemented AND reversed
101                                 patterns.
102
103                Allowed mismatches
104
105                        Defines the minimum and maximum allowed number of
106                        non-matching base characters.
107
108NOTES           Found patterns hide possibly activated column statistics.
109
110EXAMPLES        None
111
112WARNINGS        None
113
114BUGS            No bugs known
115
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