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1 | #Please insert up references in the next lines (line starts with keyword UP) |
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2 | UP arb.hlp |
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3 | UP glossary.hlp |
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4 | UP pa_optimizer.hlp |
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5 | |
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6 | #Please insert subtopic references (line starts with keyword SUB) |
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7 | SUB pa_globopti.hlp |
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8 | |
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9 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
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10 | |
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11 | #************* Title of helpfile !! and start of real helpfile ******** |
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12 | TITLE Local optimization |
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13 | |
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14 | OCCURRENCE ARB_PARSIMONY/Tree/Tree Optimization/Recursive NNI |
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15 | ARB_PARSIMONY/<NNI-mode-button> |
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16 | |
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17 | DESCRIPTION Locally optimizes (parts of) the current tree. |
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18 | |
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19 | When called from the 'Tree optimization' window, the optimization is always |
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20 | applied to the whole tree. When called via LINK{mode_nni.hlp}, it depends on |
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21 | where you click to. |
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22 | The settings from LINK{pa_optimizer.hlp} are used to select |
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23 | the branches to optimize (e.g. marked and/or visible only). |
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24 | |
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25 | At each such branch, this optimization attempts one NNI (see LINK{nni.hlp}). |
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26 | If the tree topology improves by that modification, it will be kept. |
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27 | Otherwise it will be undone. |
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28 | |
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29 | If a better topology has been found, the recursion starts again (and again...) |
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30 | until no NNI further improved the tree (see LINK{mode_nni.hlp} for exceptions). |
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31 | |
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32 | NOTES None |
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33 | |
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34 | EXAMPLES None |
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35 | |
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36 | WARNINGS None |
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37 | |
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38 | BUGS No bugs known |
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