#609 closed defect (fixed)
'Add marked partial species' fails if no overlap
Reported by: | westram | Owned by: | westram |
---|---|---|---|
Priority: | major | Milestone: | arb7.0 |
Component: | ARB_PARSIMONY | Version: | SVN |
Keywords: | Cc: |
Description (last modified by westram)
if partial and (one) full-length species do not overlap at all, the partial will be added there.
Reason:
- no mismatches occur, as the dots act like 'N's
- happens easily if a species has wrong alignment
(e.g. acc='L39865' in ssurefnr99_119)
Reproduce:
- load attached db
- run attached macro which does:
- insert marked 'CloTyro3' using 'Add marked partial species' into both trees
- startup editor with the (full) species used as insert position
- 'BacStear' chosen in 'tree_full'
- 'CorGluta' chosen in 'tree_part'
The insertion into 'tree_full' reproduces the :
- sequences of 'BacStear' and 'CloTyro3' do not overlap at all
- 'tree_part' does not contain 'BacStear' - so the does not happen here
blocked by #619
Attachments (2)
Change History (10)
comment:1 Changed 10 years ago by westram
- Owner changed from devel to westram
- Status changed from new to _started
comment:2 Changed 10 years ago by westram
- Description modified (diff)
Changed 10 years ago by westram
Changed 10 years ago by westram
comment:3 Changed 10 years ago by westram
comment:4 Changed 10 years ago by westram
- Description modified (diff)
comment:5 follow-up: ↓ 6 Changed 10 years ago by westram
- Resolution set to fixed
- Status changed from _started to closed
by [13452]
comment:6 in reply to: ↑ 5 Changed 10 years ago by westram
comment:7 Changed 9 years ago by westram
- Milestone set to arb6.1
mark changes that got fixed after arb 6.0.x
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added a test demonstrating wrong behavior with [13099]