source: tags/arb-6.0-rc1

Name Size Rev Age Author Last Change
../
AISC 11176   8 years westram * fixes compilation with COVERAGE!=0 (was broken by [10956])
AISC_COM 11760   8 years epruesse do not write to stderr in SIGPIPE handler (fixes #476) stderr is …
AISC_MKPTPS 11889   8 years westram - add missing comment to closing #endif of test-sections
ARB_GDE 11948   8 years westram * reintegrates 'customize' into 'trunk' - slightly refactored …
ARBDB 11947   8 years westram * merge misc changes from 'customize' into 'trunk' * adds: - …
AWT 11968   8 years westram * reintegrates 'customize' into 'trunk' - implements #263 * …
AWTC 11889   8 years westram - add missing comment to closing #endif of test-sections
AWTI 11968   8 years westram * reintegrates 'customize' into 'trunk' - implements #263 * …
bin 11778   8 years westram * reintegrates 'macros' into 'trunk' - implements #456 * adds: …
BINDEP 10577   8 years westram - added a bunch of small arb tools into dependency decls
BINDINGS 10998   8 years westram * cflags were completely unused (untested)
BUGEX 7044   11 years westram * fixed include wrappers (merges [7006] [7007]) - use gcc-style …
CONSENSUS_TREE 11488   8 years westram * reintegrates 'tree' into 'trunk' - implements #417 (multifurcate …
CONVERTALN 11947   8 years westram * merge misc changes from 'customize' into 'trunk' * adds: - …
CORE 11889   8 years westram - add missing comment to closing #endif of test-sections
DBSERVER 11167   8 years westram - leak stuffed
DIST 11968   8 years westram * reintegrates 'customize' into 'trunk' - implements #263 * …
doc 6141   12 years westram * spellchecked all (phew)
EDIT4 11948   8 years westram * reintegrates 'customize' into 'trunk' - slightly refactored …
EISPACK 10996   8 years westram * use cflags before cxxflags
etc 6141   12 years westram * spellchecked all (phew)
GDE 11822   8 years westram - 32bit compilation passes (fixes #494; native compilation)
GDEHELP 11886   8 years westram * reintegrates 'cleanup' into 'trunk' * adds: - …
GENOM 11838   8 years westram * code visibility - made functions static - moved functions …
GENOM_IMPORT 11844   8 years westram * merge [11840:11843] from 'customize' into 'trunk' * adds: - …
GL 11805   8 years westram * export 'LINUX' and 'REDHAT' to submakefiles * use ifeq instead of …
HEADERLIBS 7895   10 years westram * added arb_rnacma (correlated mutation analysis) written by Breno …
HELP_SOURCE 11968   8 years westram * reintegrates 'customize' into 'trunk' - implements #263 * …
ISLAND_HOPPING 10997   8 years westram * use cflags before cxxflags (where locally modified)
lib 11968   8 years westram * reintegrates 'customize' into 'trunk' - implements #263 * …
MERGE 11968   8 years westram * reintegrates 'customize' into 'trunk' - implements #263 * …
MULTI_PROBE 11889   8 years westram - add missing comment to closing #endif of test-sections
NALIGNER 11060   8 years westram * reintegrates 'ptsfix' into 'trunk': * adds: - …
NAMES 11060   8 years westram * reintegrates 'ptsfix' into 'trunk': * adds: - …
NAMES_COM 11060   8 years westram * reintegrates 'ptsfix' into 'trunk': * adds: - …
NTREE 11968   8 years westram * reintegrates 'customize' into 'trunk' - implements #263 * …
PARSIMONY 11930   8 years westram * add mnemonic check for help-menu-topics * fix mnemonics in help-menus
PERL2ARB 11914   8 years westram - fixes compilation error on OSX (with perl 5.16) thx to matt
PERL_SCRIPTS 11805   8 years westram * export 'LINUX' and 'REDHAT' to submakefiles * use ifeq instead of …
PERLTOOLS 11844   8 years westram * merge [11840:11843] from 'customize' into 'trunk' * adds: - …
PHYLO 11645   8 years westram * fix missing/duplicated/invalid mnemonics in rest of arb (completes …
PRIMER_DESIGN 11512   8 years westram * merge [11502,11504,11505] from 'dist' into 'trunk' * adds: - …
PROBE 11826   8 years westram - fix NULL ptr conversions
PROBE_COM 11492   8 years westram * fix several doxygen issues (doxygen 1.6.3) - force macro …
PROBE_DESIGN 11930   8 years westram * add mnemonic check for help-menu-topics * fix mnemonics in help-menus
PROBE_SET 11464   8 years westram - un-dummy-fied transaction (renames only)
ptpan 11060   8 years westram * reintegrates 'ptsfix' into 'trunk': * adds: - …
READSEQ 11805   8 years westram * export 'LINUX' and 'REDHAT' to submakefiles * use ifeq instead of …
RNA3D 11464   8 years westram - un-dummy-fied transaction (renames only)
RNACMA 10997   8 years westram * use cflags before cxxflags (where locally modified)
SECEDIT 11968   8 years westram * reintegrates 'customize' into 'trunk' - implements #263 * …
SEQ_QUALITY 11512   8 years westram * merge [11502,11504,11505] from 'dist' into 'trunk' * adds: - …
SERVERCNTRL 11915   8 years westram - changed 'server startup error' message (was to closely considering …
SH 11820   8 years westram - added libglib2.0-dev
SL 11948   8 years westram * reintegrates 'customize' into 'trunk' - slightly refactored …
SOURCE_TOOLS 11970   8 years westram - update changelog / release instructions
STAT 11401   8 years westram * reintegrates 'tree' into 'trunk': - consensus trees: * …
TEMPLATES 11889   8 years westram - add missing comment to closing #endif of test-sections
TOOLS 11889   8 years westram - add missing comment to closing #endif of test-sections
TREEGEN 10996   8 years westram * use cflags before cxxflags
UNIT_TESTER 11888   8 years westram - highlight differences in production code triggered by build-flag …
util 11947   8 years westram * merge misc changes from 'customize' into 'trunk' * adds: - …
WETC 11034   8 years westram * depends for [11033]
WINDOW 11968   8 years westram * reintegrates 'customize' into 'trunk' - implements #263 * …
XML 11012   8 years westram * misc warnings fixed; others suppressed
XML_IMPORT 10996   8 years westram * use cflags before cxxflags
arb_CHANGES.txt 15.7 KB 11970   8 years westram - update changelog / release instructions
arb_install.sh 14.2 KB 11718   8 years westram * reverts [11717] * merge [11714] into trunk (accidentally went into …
arb_INSTALL.txt 3.7 KB 11718   8 years westram * reverts [11717] * merge [11714] into trunk (accidentally went into …
arb_LICENSE.txt 10.8 KB 10842   8 years westram * reintegrates 'help' into 'trunk': * adds: - …
arb_OS_X.txt 5.5 KB 10375   8 years westram - xmkmf is unused
arb_OS_X_MacPorts.txt 370 bytes 6288   12 years westram * include ALL arb_*.txt into release tarball * renamed …
arb_README.txt 6.3 KB 11718   8 years westram * reverts [11717] * merge [11714] into trunk (accidentally went into …
arb_UBUNTU.txt 1.3 KB 10420   8 years epruesse - work around linking bug in centos5 - add libreadline-dev to ubuntu …
arbsrc_README.txt 210 bytes 6288   12 years westram * include ALL arb_*.txt into release tarball * renamed …
arbsrc_README_gcc.txt 2.1 KB 7331   11 years westram - tested and added gcc 4.5.2
config.makefile.template 1.7 KB 11460   8 years westram * make usage of stabs format configurable via config.makefile
demo.arb 78.9 KB 7664   10 years westram * merge from dev [7509] [7510] [7511] [7514] [7517] [7520] [7524]
Doxyfile 62.3 KB 11492   8 years westram * fix several doxygen issues (doxygen 1.6.3) - force macro …
Makefile 65.1 KB 11959   8 years westram - fix macros for OSX (thx to Matt)
README 717 bytes 5390   14 years westram - TAB-Ex
  • Property svn:ignore set to
    *.last_gcc
    ARB_SOURCE_DOC
    ChangeLog
    INCLUDE
    PERL5
    arb.tgz
    arbsrc.lst
    arbsrc_*.tgz
    compile.log
    config.makefile
    do_core
    TAGS
    .cdtproject
    .project
    .settings
    arbsrc.tgz
    *.bak
    arb_time.log
    latest.patch
    patches.arb
    makeloc.here
    interdiff.patch
    white.patch
    latest_iwhite.patch
    nbproject
    fulldiff.patch
    untested.patch
    *.last_compiler
    arb-dev.tgz
  • Property svn:mergeinfo set to (toggle deleted branches)
    /branches/alilink11490-11577
    /branches/help10647-10841
    /branches/tree10290-10481,​10500-11400,​11403-11422,​11425-11487,​11556-11559
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    /branches/bugrep11744-11753
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    /branches/cxx119320-9515
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    /branches/dev7288-7291,​7294-7296,​7824-7828,​7830,​7833-7834,​7837-7838,​7841-7843,​7845-7848,​7876-7877,​7912,​7914,​7938-7939,​7942-7943,​7967,​7969-7970,​7972-7974,​7976-7977,​9506-9507
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    /branches/e4fix8134-8632
    /branches/fix11579-11625,​11890-11901,​11904-11910
    /branches/fixMergeinfo9177-9181
    /branches/gtk9379,​9432
    /branches/gtk_only9554,​9698,​9745,​9749,​10108
    /branches/helptest10585-10720
    /branches/macros9677-9841,​11761-11777,​11780-11797
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    /branches/stable_5.08635,​8655,​9163-9164,​9166,​9171
    /branches/treeTests11198-11335
    /branches/xpmfix9770-9776
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