Last change
on this file was
6142,
checked in by westram, 15 years ago
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- backport [6141] (parts not affecting code at all, i.e. helpfiles, figs, ..)
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-
Property svn:eol-style set to
native
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Property svn:keywords set to
Author Date Id Revision
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File size:
1.6 KB
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1 | #Please insert up references in the next lines (line starts with keyword UP) |
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2 | UP arb.hlp |
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3 | UP glossary.hlp |
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4 | UP arb_pars.hlp |
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5 | |
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6 | #Please insert subtopic references (line starts with keyword SUB) |
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7 | #SUB sel_fil.hlp |
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8 | SUB phyl.hlp |
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9 | SUB phylo.hlp |
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10 | |
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11 | # Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain} |
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12 | |
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13 | #************* Title of helpfile !! and start of real helpfile ******** |
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14 | |
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15 | TITLE ARB Parsimony |
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16 | |
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17 | OCCURRENCE ARB_NT/Tree/Add species to existing tree/Parsimony ... |
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18 | |
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19 | DESCRIPTION In this release, 'ARB Parsimony' cannot be used to reconstruct |
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20 | new trees. |
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21 | |
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22 | Existing trees can be optimized at different levels (depths) |
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23 | according to maximum parsimony criteria. |
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24 | |
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25 | New sequences (species) can be placed rapidly into an existing |
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26 | tree. This can be done without changing that tree or allowing |
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27 | optimization at different levels according to maximum parsimony |
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28 | criteria including the new information for calculation. |
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29 | |
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30 | Filters for the in- or exclusion of alignment columns |
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31 | ('ARB_NT/SAI; ARB_NT/Tree/Dist Matrix) can be selected. |
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32 | |
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33 | After selecting one of the parsimony items in 'Tree/Add species to existing tree' |
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34 | the 'SET PARSIMONY OPTIONS' window appears: |
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35 | |
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36 | - Select the tree (to be modified) from the 'Tree:' subwindow. |
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37 | |
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38 | - Select an 'alignment' (see LINK{glossary.hlp}) from the |
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39 | 'alignment:' subwindow. |
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40 | |
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41 | - To select a filter display the 'Select Filter' window pressing |
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42 | the button after the 'Filter:' prompt (see LINK{sel_fil.hlp}). |
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43 | |
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44 | - Press the <GO> button to display the 'ARB_PARSIMONY' window. |
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45 | |
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46 | NOTES None |
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47 | |
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48 | EXAMPLES None |
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49 | |
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50 | WARNINGS None |
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51 | |
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52 | BUGS No bugs known |
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