source: tags/arb_5.5

Name Size Rev Age Author Last Change
../
AISC 8525   10 years westram (partial) merge from trunk [8322] [8324] [8325] [8326] [8327] * …
AISC_COM 6778   11 years westram - merged [6377]+[6465]
AISC_MKPTPS 5968   13 years westram * new flag -w to aisc_mkpt (add include wrapper) * uniform style for …
ALIV3 5894   13 years westram * reactivated original GB_close * removed GB_exit (use GB_close) * …
ARB_GDE 6143   12 years westram * backport [6141] (parts changing code, but only strings and comments)
ARBDB 9153   9 years westram merge from trunk [8664] [9004] [9120]
ARBDB2 6020   13 years westram * splitted adtools.c into multiple files (no code change)
ARBDBPP 6143   12 years westram * backport [6141] (parts changing code, but only strings and comments)
ARBDBS 6020   13 years westram * splitted adtools.c into multiple files (no code change)
AWT 8301   10 years westram * fixed some realigner bugs - when species did not contain …
AWTC 6127   12 years westram - added some comment-pointers about code-dependencies
AWTI 9164   9 years westram * compile fix for gcc 4.7 (thx to Christian Quast) * merge [8912]
bin 6178   12 years westram * ignores
BUGEX 5675   13 years westram - removed automatic timestamps (the best they were good for, were …
CONSENSUS_TREE 6143   12 years westram * backport [6141] (parts changing code, but only strings and comments)
CONVERTALN 5968   13 years westram * new flag -w to aisc_mkpt (add include wrapper) * uniform style for …
DBSERVER 5872   13 years westram * Changed variable transfer to sub-makefiles - most variables are …
DIST 6143   12 years westram * backport [6141] (parts changing code, but only strings and comments)
doc 6142   12 years westram * backport [6141] (parts not affecting code at all, i.e. helpfiles, …
EDIT 6100   12 years westram * fix warning "format not a string literal and no format arguments" …
EDIT4 6358   12 years westram - backport [6353], [6354] and [6357]
EISPACK 5471   13 years westram - ignore Makefile.bak and TAGS
etc 6142   12 years westram * backport [6141] (parts not affecting code at all, i.e. helpfiles, …
GDE 8777   10 years epruesse merge gcc 4.6 fixes from r8240
GDEHELP 9163   9 years westram * report suppressed failure when creating ARB_GDEmenus (first command …
GENOM 6143   12 years westram * backport [6141] (parts changing code, but only strings and comments)
GENOM_IMPORT 6104   12 years westram * use GB_warningf instead of GB_warning(GBS_global_string) * same for …
GL 9153   9 years westram merge from trunk [8664] [9004] [9120]
HELP_SOURCE 8525   10 years westram (partial) merge from trunk [8322] [8324] [8325] [8326] [8327] * …
ISLAND_HOPPING 5968   13 years westram * new flag -w to aisc_mkpt (add include wrapper) * uniform style for …
JAVALIB 2   21 years oldcode Initial revision
lib 7486   11 years westram based on a …
MERGE 6121   12 years westram * fixed macro ids for merge species window
MULTI_PROBE 6156   12 years westram * backport [6155]
NALIGNER 5894   13 years westram * reactivated original GB_close * removed GB_exit (use GB_close) * …
NAMES 6084   12 years westram * name servers with add.field have to be started with …
NAMES_COM 8525   10 years westram (partial) merge from trunk [8322] [8324] [8325] [8326] [8327] * …
NTREE 8301   10 years westram * fixed some realigner bugs - when species did not contain …
PARSIMONY 6341   12 years westram - backport [6340]
PERL2ARB 8635   10 years westram * merged OSX patches into [6192] (thx to Matt)
PERL_SCRIPTS 7738   10 years westram - merge from trunk [7737]
PGT 5825   13 years westram * replaced GB_entry/GB_create/GB_search+GB_read_XXX by GBT_read_XXX * …
PHYLO 6072   12 years westram * added missing and fixed broken hotkeys
PRIMER_DESIGN 6100   12 years westram * fix warning "format not a string literal and no format arguments" …
PROBE 8215   10 years westram - guard truncated probe match against misunderstandings - increase …
PROBE_COM 8525   10 years westram (partial) merge from trunk [8322] [8324] [8325] [8326] [8327] * …
PROBE_DESIGN 8215   10 years westram - guard truncated probe match against misunderstandings - increase …
PROBE_SET 5855   13 years westram * final followup to [5854] - GB_get_error() → GB_await_error() …
ptpan 6419   12 years westram - backport [6418]
READSEQ 6287   12 years westram - backport [6285] [6286]
RNA3D 8635   10 years westram * merged OSX patches into [6192] (thx to Matt)
SECEDIT 6258   12 years westram - backport [6256]
SEQ_QUALITY 6143   12 years westram * backport [6141] (parts changing code, but only strings and comments)
SERVERCNTRL 6100   12 years westram * fix warning "format not a string literal and no format arguments" …
SH 8525   10 years westram (partial) merge from trunk [8322] [8324] [8325] [8326] [8327] * …
SL 6287   12 years westram - backport [6285] [6286]
SOURCE_TOOLS 9167   9 years westram Auto version upgrade to 5.5 by devel@…
STAT 6010   13 years westram * ST_ML * in case of error (while loading tree), set tree variables …
TEMPLATES 6521   12 years westram * added COMPILE_ASSERT * assert correct pointersizes for PT-server
TOOLS 6287   12 years westram - backport [6285] [6286]
TREEGEN 5471   13 years westram - ignore Makefile.bak and TAGS
util 9154   9 years westram merge from dev [7782]
WETC 5901   13 years westram - AW_BOOL → bool
WINDOW 6589   12 years westram - backport [6588]
XML 5709   13 years westram - made depends for [5708]
XML_IMPORT 5900   13 years westram - fixed senseless warning
!BRANCH_STATE 2.1 KB 8213   10 years westram * update
arb_CHANGES.txt 10.8 KB 9165   9 years westram * changes for arb_5.5
arb_DEBUG.txt 1.2 KB 578   20 years westram * empty log message *
arb_install.sh 14.3 KB 6351   12 years westram - backport [6350]
arb_INSTALL.txt 3.6 KB 7132   11 years westram - merged [7131] to stable
arb_LICENSE.txt 10.5 KB 8203   10 years westram - removed molphy (protml)
arb_OS_X.txt 5.5 KB 6215   12 years westram - merged [6214]
arb_OS_X_MacPorts.txt 370 bytes 6289   12 years westram - backport [6288]
arb_README.txt 5.9 KB 8211   10 years westram
arb_UBUNTU.txt 1.2 KB 8207   10 years westram - 10.04
arbsrc_README.txt 210 bytes 6289   12 years westram - backport [6288]
arbsrc_README_gcc.txt 1.4 KB 6289   12 years westram - backport [6288]
config.makefile.template 1.5 KB 6163   12 years westram * backport [6161] + [6162]
demo.arb 78.3 KB 6195   12 years westram * repaired, tree and compression optimized
Doxyfile 7.2 KB 6142   12 years westram * backport [6141] (parts not affecting code at all, i.e. helpfiles, …
Makefile 39.2 KB 9166   9 years westram attempt to fix failing build of 'make -j9 do_release' (dont understand …
README 717 bytes 5390   14 years westram - TAB-Ex
  • Property svn:ignore set to
    *.last_gcc
    ARB_SOURCE_DOC
    ChangeLog
    INCLUDE
    LIBLINK
    MAKEBIN
    PERL5
    arb.tgz
    arbsrc.lst
    arbsrc_*.tgz
    compile.log
    config.makefile
    demo.ARF
    demo.a[0-9][0-9]
    do_core
    TAGS
    .cdtproject
    .project
    .settings
    arbsrc.tgz
  • Property svn:mergeinfo set to (toggle deleted branches)
    /trunk7491,​8240,​8322,​8324-8327,​8664,​8806-8808,​8912,​9004,​9120
    /branches/dev7782
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