| 1 | // ============================================================ // |
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| 2 | // // |
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| 3 | // File : TreeWrite.h // |
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| 4 | // Purpose : // |
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| 5 | // // |
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| 6 | // Institute of Microbiology (Technical University Munich) // |
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| 7 | // www.arb-home.de // |
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| 8 | // // |
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| 9 | // ============================================================ // |
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| 10 | |
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| 11 | #ifndef TREEWRITE_H |
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| 12 | #define TREEWRITE_H |
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| 13 | |
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| 14 | #ifndef ARBDB_BASE_H |
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| 15 | #include <arbdb_base.h> |
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| 16 | #endif |
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| 17 | #ifndef NDS_H |
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| 18 | #include <nds.h> |
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| 19 | #endif |
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| 20 | |
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| 21 | typedef void (*TREE_make_node_text_init)(GBDATA *gb_main); |
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| 22 | typedef const char *(*TREE_make_node_text) (GBDATA *gb_main, GBDATA * gbd, enum NDS_Type mode, TreeNode *species, const char *tree_name); |
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| 23 | |
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| 24 | struct TREE_node_text_gen { |
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| 25 | TREE_make_node_text_init init; // e.g. make_node_text_init() from AWT |
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| 26 | TREE_make_node_text gen; // e.g. make_node_text_nds() from AWT |
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| 27 | |
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| 28 | TREE_node_text_gen(TREE_make_node_text_init init_, TREE_make_node_text gen_) |
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| 29 | : init(init_) |
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| 30 | , gen(gen_) |
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| 31 | {} |
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| 32 | }; |
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| 33 | |
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| 34 | enum TREE_node_quoting { |
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| 35 | TREE_DISALLOW_QUOTES = 0, // don't use quotes |
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| 36 | TREE_SINGLE_QUOTES = 1, // use single quotes |
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| 37 | TREE_DOUBLE_QUOTES = 2, // use double quotes |
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| 38 | |
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| 39 | TREE_FORCE_QUOTES = 4, // force usage of quotes |
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| 40 | TREE_FORCE_REPLACE = 8, // replace all problematic characters (default is to replace quotes in quoted labels) |
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| 41 | }; |
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| 42 | |
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| 43 | GB_ERROR TREE_write_Newick(GBDATA *gb_main, const char *tree_name, const TREE_node_text_gen *node_gen, bool save_branchlengths, bool save_bootstraps, bool save_groupnames, bool pretty, TREE_node_quoting quoteMode, const char *path); |
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| 44 | GB_ERROR TREE_write_XML(GBDATA *gb_main, const char *db_name, const char *tree_name, const TREE_node_text_gen *node_gen, bool skip_folded, const char *path); |
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| 45 | GB_ERROR TREE_export_tree(GBDATA *gb_main, FILE *out, TreeNode *tree, bool triple_root, bool export_branchlens, bool use_double_quotes); |
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| 46 | |
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| 47 | #else |
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| 48 | #error TreeWrite.h included twice |
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| 49 | #endif // TREEWRITE_H |
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