source: tags/ms_r16q4/TOOLS/Makefile

Last change on this file was 15425, checked in by westram, 8 years ago
  • reintegrates 'mladd' into 'trunk'
    • improves raxml8 interface
      • new functions
        • score tree (=calculate likelihood and append to comment)
        • calculate branchlengths
        • optimize tree
        • add to tree (implements #681)
      • calculate bootstraps (as separate function or combined with other functions)
        • allow to skip bootstrap calculation
      • writes comment to generated trees (similar to raxml7-interface)
      • fix key-wait on terminate
      • time all functions
      • fix thread usage
        • use 'distinct alignment patterns' (as reported by RAxML) to select maximum threads
        • slightly reduce threads in favor of asynchronous bootstrapping
        • allow to override (used) cores and used threads separate
    • adds arb_write_tree_comment
  • adds: log:branches/mladd@15394,15396,15398:15424
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 23.2 KB
Line 
1.SUFFIXES: .c .cxx .depend .o
2
3TOOLS := \
4        arb_2_ascii \
5        arb_2_bin \
6        arb_a2ps \
7        arb_consensus_tree \
8        arb_dnarates \
9        arb_export_rates \
10        arb_export_sequences \
11        arb_export_tree \
12        arb_flush_mem \
13        arb_gene_probe \
14        arb_message \
15        arb_notify \
16        arb_primer \
17        arb_probe \
18        arb_probe_match \
19        arb_read_tree \
20        arb_write_tree_comment \
21        arb_replace \
22
23ifeq ($(DEBUG),1)
24# add all arb*test*.c[xx] files
25TOOLS += $(subst .c,,$(wildcard arb*test*.c))
26TOOLS += $(subst .cxx,,$(wildcard arb*test*.cxx))
27else
28ifeq ($(UNIT_TESTS),1)
29TOOLS += arb_test
30endif
31endif
32
33# ------------------------------------------------------------
34# if you change lib-dependencies here,
35# please update corresponding definitions in ../BINDEP/
36# and in ../Makefile@TOOLSLIBDEPENDS
37
38LIB_ARBDB               := $(LIBPATH) $(ARBDB_LIB) $(ARB_GLIB_LIBS)
39LIBS_ARB_PROBE          := ../SERVERCNTRL/SERVERCNTRL.a ../PROBE_COM/client.a ../SL/REGEXPR/REGEXPR.a
40LIBS_ARB_READ_TREE      := ../SL/TREE_READ/TREE_READ.a
41LIBS_ARB_EXPORT_TREE    := ../SL/TREE_WRITE/TREE_WRITE.a ../XML/XML.a $(LIBS_ARB_READ_TREE)
42LIBS_ARB_EXPORT_SEQ     := ../SL/SEQIO/SEQIO.a ../XML/XML.a ../SL/INSDEL/INSDEL.a ../SL/FILTER/FILTER.a
43LIBS_ARB_CONSENSUS_TREE := $(LIBS_ARB_EXPORT_TREE) ../CONSENSUS_TREE/CONSENSUS_TREE.a
44
45OBJECTS:=$(addsuffix .o,$(TOOLS))
46BINARIES:=$(addprefix $(ARBHOME)/bin/,$(TOOLS))
47
48all: $(BINARIES)
49
50%.o: %.cxx
51        $(A_CXX) $(cflags) $(cxxflags) -c $< $(CXX_INCLUDES) $(POST_COMPILE) $<
52
53%.o: %.c
54        $(A_CC) $(cflags) -c $< $(CC_INCLUDES) $(POST_COMPILE) $<
55
56$(ARBHOME)/bin/arb_probe: arb_probe.o $(LIBS_ARB_PROBE) $(use_ARB_main)
57        $(LINK_EXECUTABLE) $@ $(use_ARB_main) $< $(EXECLIBS) $(LIBS_ARB_PROBE) $(LIB_ARBDB) 
58
59$(ARBHOME)/bin/arb_probe_match: arb_probe_match.o $(LIBS_ARB_PROBE) $(use_ARB_main)
60        $(LINK_EXECUTABLE) $@ $(use_ARB_main) $< $(EXECLIBS) $(LIBS_ARB_PROBE) $(LIB_ARBDB) 
61
62$(ARBHOME)/bin/arb_read_tree: arb_read_tree.o  $(LIBS_ARB_READ_TREE)
63        $(LINK_EXECUTABLE) $@ $< $(EXECLIBS) $(LIBS_ARB_READ_TREE) $(LIB_ARBDB) 
64
65$(ARBHOME)/bin/arb_write_tree_comment: arb_write_tree_comment.o
66        $(LINK_EXECUTABLE) $@ $< $(EXECLIBS) $(LIB_ARBDB) 
67
68$(ARBHOME)/bin/arb_export_tree: arb_export_tree.o  $(LIBS_ARB_EXPORT_TREE)
69        $(LINK_EXECUTABLE) $@ $< $(EXECLIBS) $(LIBS_ARB_EXPORT_TREE) $(LIB_ARBDB) 
70
71$(ARBHOME)/bin/arb_export_sequences: arb_export_sequences.o  $(LIBS_ARB_EXPORT_SEQ)
72        $(LINK_EXECUTABLE) $@ $< $(EXECLIBS) $(LIBS_ARB_EXPORT_SEQ) $(LIB_ARBDB) 
73
74$(ARBHOME)/bin/arb_consensus_tree: arb_consensus_tree.o  $(LIBS_ARB_CONSENSUS_TREE) $(use_ARB_main)
75        $(LINK_EXECUTABLE) $@ $(use_ARB_main) $< $(EXECLIBS) $(LIBS_ARB_CONSENSUS_TREE) $(LIB_ARBDB) 
76
77$(ARBHOME)/bin/arb_a2ps: arb_a2ps.o $(use_ARB_main_C)
78        $(LINK_EXECUTABLE) $@ $(use_ARB_main_C) $< $(EXECLIBS) $(LIB_ARBDB)
79
80$(ARBHOME)/bin/%: %.o $(use_ARB_main)
81        $(LINK_EXECUTABLE) $@ $(use_ARB_main) $< $(EXECLIBS) $(LIB_ARBDB)
82
83clean:
84        rm -f $(BINARIES)
85        rm -f $(OBJECTS)
86
87proto:
88        @echo "Nothing todo for proto in TOOLS"
89
90depends:
91        $(MAKE) "DEBUG=1" depends_debug
92
93DEPENDS = $(OBJECTS:.o=.depend)
94depends_debug: $(DEPENDS) 
95        @cat $(DEPENDS) | grep -v '^#' >>Makefile
96        @rm $(DEPENDS)
97$(DEPENDS): depend.init
98depend.init:
99        $(MAKEDEPEND) $(MAKEDEPENDFLAGS) 2>/dev/null # remove dependencies
100.cxx.depend:
101        $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@
102.c.depend:
103        $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@
104
105# DO NOT DELETE
106
107# Do not add dependencies manually - use 'make depend' in $ARBHOME
108# For formatting issues see SOURCE_TOOLS/fix_depends.pl (from main)
109
110arb_2_ascii.o: $(ARBHOME)/INCLUDE/ad_prot.h
111arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_assert.h
112arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_core.h
113arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_error.h
114arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_handlers.h
115arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_mem.h
116arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_msg.h
117arb_2_ascii.o: $(ARBHOME)/INCLUDE/arb_string.h
118arb_2_ascii.o: $(ARBHOME)/INCLUDE/arbdb.h
119arb_2_ascii.o: $(ARBHOME)/INCLUDE/arbdb_base.h
120arb_2_ascii.o: $(ARBHOME)/INCLUDE/arbtools.h
121arb_2_ascii.o: $(ARBHOME)/INCLUDE/attributes.h
122arb_2_ascii.o: $(ARBHOME)/INCLUDE/cxxforward.h
123arb_2_ascii.o: $(ARBHOME)/INCLUDE/dupstr.h
124arb_2_ascii.o: $(ARBHOME)/INCLUDE/gccver.h
125arb_2_ascii.o: $(ARBHOME)/INCLUDE/smartptr.h
126arb_2_ascii.o: $(ARBHOME)/INCLUDE/test_global.h
127
128arb_2_bin.o: $(ARBHOME)/INCLUDE/ad_prot.h
129arb_2_bin.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
130arb_2_bin.o: $(ARBHOME)/INCLUDE/arb_assert.h
131arb_2_bin.o: $(ARBHOME)/INCLUDE/arb_core.h
132arb_2_bin.o: $(ARBHOME)/INCLUDE/arb_error.h
133arb_2_bin.o: $(ARBHOME)/INCLUDE/arb_mem.h
134arb_2_bin.o: $(ARBHOME)/INCLUDE/arb_msg.h
135arb_2_bin.o: $(ARBHOME)/INCLUDE/arb_string.h
136arb_2_bin.o: $(ARBHOME)/INCLUDE/arbdb.h
137arb_2_bin.o: $(ARBHOME)/INCLUDE/arbdb_base.h
138arb_2_bin.o: $(ARBHOME)/INCLUDE/arbdbt.h
139arb_2_bin.o: $(ARBHOME)/INCLUDE/arbtools.h
140arb_2_bin.o: $(ARBHOME)/INCLUDE/attributes.h
141arb_2_bin.o: $(ARBHOME)/INCLUDE/cxxforward.h
142arb_2_bin.o: $(ARBHOME)/INCLUDE/downcast.h
143arb_2_bin.o: $(ARBHOME)/INCLUDE/dupstr.h
144arb_2_bin.o: $(ARBHOME)/INCLUDE/gccver.h
145arb_2_bin.o: $(ARBHOME)/INCLUDE/smartptr.h
146arb_2_bin.o: $(ARBHOME)/INCLUDE/static_assert.h
147arb_2_bin.o: $(ARBHOME)/INCLUDE/test_global.h
148
149arb_consensus_tree.o: $(ARBHOME)/INCLUDE/ad_prot.h
150arb_consensus_tree.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
151arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_assert.h
152arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_core.h
153arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_defs.h
154arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_diff.h
155arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_error.h
156arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_file.h
157arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_mem.h
158arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_msg.h
159arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_progress.h
160arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_str.h
161arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_strarray.h
162arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arb_string.h
163arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arbdb.h
164arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arbdb_base.h
165arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arbdbt.h
166arb_consensus_tree.o: $(ARBHOME)/INCLUDE/arbtools.h
167arb_consensus_tree.o: $(ARBHOME)/INCLUDE/attributes.h
168arb_consensus_tree.o: $(ARBHOME)/INCLUDE/aw_base.hxx
169arb_consensus_tree.o: $(ARBHOME)/INCLUDE/command_output.h
170arb_consensus_tree.o: $(ARBHOME)/INCLUDE/CT_ctree.hxx
171arb_consensus_tree.o: $(ARBHOME)/INCLUDE/cxxforward.h
172arb_consensus_tree.o: $(ARBHOME)/INCLUDE/downcast.h
173arb_consensus_tree.o: $(ARBHOME)/INCLUDE/dupstr.h
174arb_consensus_tree.o: $(ARBHOME)/INCLUDE/gccver.h
175arb_consensus_tree.o: $(ARBHOME)/INCLUDE/nds.h
176arb_consensus_tree.o: $(ARBHOME)/INCLUDE/smartptr.h
177arb_consensus_tree.o: $(ARBHOME)/INCLUDE/static_assert.h
178arb_consensus_tree.o: $(ARBHOME)/INCLUDE/test_global.h
179arb_consensus_tree.o: $(ARBHOME)/INCLUDE/test_unit.h
180arb_consensus_tree.o: $(ARBHOME)/INCLUDE/TreeNode.h
181arb_consensus_tree.o: $(ARBHOME)/INCLUDE/TreeRead.h
182arb_consensus_tree.o: $(ARBHOME)/INCLUDE/TreeWrite.h
183arb_consensus_tree.o: $(ARBHOME)/INCLUDE/ut_valgrinded.h
184
185arb_dnarates.o: DNAml_rates_1_0.h
186arb_dnarates.o: $(ARBHOME)/INCLUDE/ad_prot.h
187arb_dnarates.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
188arb_dnarates.o: $(ARBHOME)/INCLUDE/arb_assert.h
189arb_dnarates.o: $(ARBHOME)/INCLUDE/arb_core.h
190arb_dnarates.o: $(ARBHOME)/INCLUDE/arb_error.h
191arb_dnarates.o: $(ARBHOME)/INCLUDE/arb_mem.h
192arb_dnarates.o: $(ARBHOME)/INCLUDE/arb_msg.h
193arb_dnarates.o: $(ARBHOME)/INCLUDE/arb_string.h
194arb_dnarates.o: $(ARBHOME)/INCLUDE/arbdb.h
195arb_dnarates.o: $(ARBHOME)/INCLUDE/arbdb_base.h
196arb_dnarates.o: $(ARBHOME)/INCLUDE/arbdbt.h
197arb_dnarates.o: $(ARBHOME)/INCLUDE/arbtools.h
198arb_dnarates.o: $(ARBHOME)/INCLUDE/attributes.h
199arb_dnarates.o: $(ARBHOME)/INCLUDE/aw_awar_defs.hxx
200arb_dnarates.o: $(ARBHOME)/INCLUDE/cxxforward.h
201arb_dnarates.o: $(ARBHOME)/INCLUDE/downcast.h
202arb_dnarates.o: $(ARBHOME)/INCLUDE/dupstr.h
203arb_dnarates.o: $(ARBHOME)/INCLUDE/gccver.h
204arb_dnarates.o: $(ARBHOME)/INCLUDE/smartptr.h
205arb_dnarates.o: $(ARBHOME)/INCLUDE/static_assert.h
206arb_dnarates.o: $(ARBHOME)/INCLUDE/test_global.h
207
208arb_export_rates.o: $(ARBHOME)/INCLUDE/ad_prot.h
209arb_export_rates.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
210arb_export_rates.o: $(ARBHOME)/INCLUDE/arb_assert.h
211arb_export_rates.o: $(ARBHOME)/INCLUDE/arb_core.h
212arb_export_rates.o: $(ARBHOME)/INCLUDE/arb_error.h
213arb_export_rates.o: $(ARBHOME)/INCLUDE/arb_mem.h
214arb_export_rates.o: $(ARBHOME)/INCLUDE/arb_msg.h
215arb_export_rates.o: $(ARBHOME)/INCLUDE/arb_string.h
216arb_export_rates.o: $(ARBHOME)/INCLUDE/arbdb.h
217arb_export_rates.o: $(ARBHOME)/INCLUDE/arbdb_base.h
218arb_export_rates.o: $(ARBHOME)/INCLUDE/arbdbt.h
219arb_export_rates.o: $(ARBHOME)/INCLUDE/arbtools.h
220arb_export_rates.o: $(ARBHOME)/INCLUDE/attributes.h
221arb_export_rates.o: $(ARBHOME)/INCLUDE/aw_awar_defs.hxx
222arb_export_rates.o: $(ARBHOME)/INCLUDE/cxxforward.h
223arb_export_rates.o: $(ARBHOME)/INCLUDE/downcast.h
224arb_export_rates.o: $(ARBHOME)/INCLUDE/dupstr.h
225arb_export_rates.o: $(ARBHOME)/INCLUDE/gccver.h
226arb_export_rates.o: $(ARBHOME)/INCLUDE/smartptr.h
227arb_export_rates.o: $(ARBHOME)/INCLUDE/static_assert.h
228arb_export_rates.o: $(ARBHOME)/INCLUDE/test_global.h
229
230arb_export_sequences.o: $(ARBHOME)/INCLUDE/ad_prot.h
231arb_export_sequences.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
232arb_export_sequences.o: $(ARBHOME)/INCLUDE/AP_filter.hxx
233arb_export_sequences.o: $(ARBHOME)/INCLUDE/arb_assert.h
234arb_export_sequences.o: $(ARBHOME)/INCLUDE/arb_core.h
235arb_export_sequences.o: $(ARBHOME)/INCLUDE/arb_error.h
236arb_export_sequences.o: $(ARBHOME)/INCLUDE/arb_file.h
237arb_export_sequences.o: $(ARBHOME)/INCLUDE/arb_mem.h
238arb_export_sequences.o: $(ARBHOME)/INCLUDE/arb_msg.h
239arb_export_sequences.o: $(ARBHOME)/INCLUDE/arb_string.h
240arb_export_sequences.o: $(ARBHOME)/INCLUDE/arbdb.h
241arb_export_sequences.o: $(ARBHOME)/INCLUDE/arbdb_base.h
242arb_export_sequences.o: $(ARBHOME)/INCLUDE/arbdbt.h
243arb_export_sequences.o: $(ARBHOME)/INCLUDE/arbtools.h
244arb_export_sequences.o: $(ARBHOME)/INCLUDE/attributes.h
245arb_export_sequences.o: $(ARBHOME)/INCLUDE/cxxforward.h
246arb_export_sequences.o: $(ARBHOME)/INCLUDE/downcast.h
247arb_export_sequences.o: $(ARBHOME)/INCLUDE/dupstr.h
248arb_export_sequences.o: $(ARBHOME)/INCLUDE/gccver.h
249arb_export_sequences.o: $(ARBHOME)/INCLUDE/insdel.h
250arb_export_sequences.o: $(ARBHOME)/INCLUDE/seqio.hxx
251arb_export_sequences.o: $(ARBHOME)/INCLUDE/smartptr.h
252arb_export_sequences.o: $(ARBHOME)/INCLUDE/static_assert.h
253arb_export_sequences.o: $(ARBHOME)/INCLUDE/test_global.h
254
255arb_export_tree.o: $(ARBHOME)/INCLUDE/ad_prot.h
256arb_export_tree.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
257arb_export_tree.o: $(ARBHOME)/INCLUDE/arb_assert.h
258arb_export_tree.o: $(ARBHOME)/INCLUDE/arb_core.h
259arb_export_tree.o: $(ARBHOME)/INCLUDE/arb_error.h
260arb_export_tree.o: $(ARBHOME)/INCLUDE/arb_global_defs.h
261arb_export_tree.o: $(ARBHOME)/INCLUDE/arb_handlers.h
262arb_export_tree.o: $(ARBHOME)/INCLUDE/arb_mem.h
263arb_export_tree.o: $(ARBHOME)/INCLUDE/arb_msg.h
264arb_export_tree.o: $(ARBHOME)/INCLUDE/arb_string.h
265arb_export_tree.o: $(ARBHOME)/INCLUDE/arbdb.h
266arb_export_tree.o: $(ARBHOME)/INCLUDE/arbdb_base.h
267arb_export_tree.o: $(ARBHOME)/INCLUDE/arbdbt.h
268arb_export_tree.o: $(ARBHOME)/INCLUDE/arbtools.h
269arb_export_tree.o: $(ARBHOME)/INCLUDE/attributes.h
270arb_export_tree.o: $(ARBHOME)/INCLUDE/aw_base.hxx
271arb_export_tree.o: $(ARBHOME)/INCLUDE/cxxforward.h
272arb_export_tree.o: $(ARBHOME)/INCLUDE/downcast.h
273arb_export_tree.o: $(ARBHOME)/INCLUDE/dupstr.h
274arb_export_tree.o: $(ARBHOME)/INCLUDE/gccver.h
275arb_export_tree.o: $(ARBHOME)/INCLUDE/nds.h
276arb_export_tree.o: $(ARBHOME)/INCLUDE/smartptr.h
277arb_export_tree.o: $(ARBHOME)/INCLUDE/static_assert.h
278arb_export_tree.o: $(ARBHOME)/INCLUDE/test_global.h
279arb_export_tree.o: $(ARBHOME)/INCLUDE/TreeNode.h
280arb_export_tree.o: $(ARBHOME)/INCLUDE/TreeWrite.h
281
282arb_flush_mem.o: $(ARBHOME)/INCLUDE/ad_prot.h
283arb_flush_mem.o: $(ARBHOME)/INCLUDE/arb_assert.h
284arb_flush_mem.o: $(ARBHOME)/INCLUDE/arb_core.h
285arb_flush_mem.o: $(ARBHOME)/INCLUDE/arb_error.h
286arb_flush_mem.o: $(ARBHOME)/INCLUDE/arb_mem.h
287arb_flush_mem.o: $(ARBHOME)/INCLUDE/arb_misc.h
288arb_flush_mem.o: $(ARBHOME)/INCLUDE/arb_msg.h
289arb_flush_mem.o: $(ARBHOME)/INCLUDE/arb_progress.h
290arb_flush_mem.o: $(ARBHOME)/INCLUDE/arb_string.h
291arb_flush_mem.o: $(ARBHOME)/INCLUDE/arbdb.h
292arb_flush_mem.o: $(ARBHOME)/INCLUDE/arbdb_base.h
293arb_flush_mem.o: $(ARBHOME)/INCLUDE/arbtools.h
294arb_flush_mem.o: $(ARBHOME)/INCLUDE/attributes.h
295arb_flush_mem.o: $(ARBHOME)/INCLUDE/cxxforward.h
296arb_flush_mem.o: $(ARBHOME)/INCLUDE/dupstr.h
297arb_flush_mem.o: $(ARBHOME)/INCLUDE/gccver.h
298arb_flush_mem.o: $(ARBHOME)/INCLUDE/smartptr.h
299arb_flush_mem.o: $(ARBHOME)/INCLUDE/test_global.h
300
301arb_gene_probe.o: $(ARBHOME)/INCLUDE/ad_prot.h
302arb_gene_probe.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
303arb_gene_probe.o: $(ARBHOME)/INCLUDE/adGene.h
304arb_gene_probe.o: $(ARBHOME)/INCLUDE/arb_assert.h
305arb_gene_probe.o: $(ARBHOME)/INCLUDE/arb_core.h
306arb_gene_probe.o: $(ARBHOME)/INCLUDE/arb_error.h
307arb_gene_probe.o: $(ARBHOME)/INCLUDE/arb_mem.h
308arb_gene_probe.o: $(ARBHOME)/INCLUDE/arb_msg.h
309arb_gene_probe.o: $(ARBHOME)/INCLUDE/arb_string.h
310arb_gene_probe.o: $(ARBHOME)/INCLUDE/arbdb.h
311arb_gene_probe.o: $(ARBHOME)/INCLUDE/arbdb_base.h
312arb_gene_probe.o: $(ARBHOME)/INCLUDE/arbdbt.h
313arb_gene_probe.o: $(ARBHOME)/INCLUDE/arbtools.h
314arb_gene_probe.o: $(ARBHOME)/INCLUDE/attributes.h
315arb_gene_probe.o: $(ARBHOME)/INCLUDE/cxxforward.h
316arb_gene_probe.o: $(ARBHOME)/INCLUDE/downcast.h
317arb_gene_probe.o: $(ARBHOME)/INCLUDE/dupstr.h
318arb_gene_probe.o: $(ARBHOME)/INCLUDE/gccver.h
319arb_gene_probe.o: $(ARBHOME)/INCLUDE/smartptr.h
320arb_gene_probe.o: $(ARBHOME)/INCLUDE/static_assert.h
321arb_gene_probe.o: $(ARBHOME)/INCLUDE/test_global.h
322
323arb_message.o: $(ARBHOME)/INCLUDE/ad_prot.h
324arb_message.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
325arb_message.o: $(ARBHOME)/INCLUDE/arb_assert.h
326arb_message.o: $(ARBHOME)/INCLUDE/arb_core.h
327arb_message.o: $(ARBHOME)/INCLUDE/arb_error.h
328arb_message.o: $(ARBHOME)/INCLUDE/arb_mem.h
329arb_message.o: $(ARBHOME)/INCLUDE/arb_msg.h
330arb_message.o: $(ARBHOME)/INCLUDE/arb_string.h
331arb_message.o: $(ARBHOME)/INCLUDE/arbdb.h
332arb_message.o: $(ARBHOME)/INCLUDE/arbdb_base.h
333arb_message.o: $(ARBHOME)/INCLUDE/arbdbt.h
334arb_message.o: $(ARBHOME)/INCLUDE/arbtools.h
335arb_message.o: $(ARBHOME)/INCLUDE/attributes.h
336arb_message.o: $(ARBHOME)/INCLUDE/cxxforward.h
337arb_message.o: $(ARBHOME)/INCLUDE/downcast.h
338arb_message.o: $(ARBHOME)/INCLUDE/dupstr.h
339arb_message.o: $(ARBHOME)/INCLUDE/gccver.h
340arb_message.o: $(ARBHOME)/INCLUDE/smartptr.h
341arb_message.o: $(ARBHOME)/INCLUDE/static_assert.h
342arb_message.o: $(ARBHOME)/INCLUDE/test_global.h
343
344arb_notify.o: $(ARBHOME)/INCLUDE/ad_prot.h
345arb_notify.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
346arb_notify.o: $(ARBHOME)/INCLUDE/arb_assert.h
347arb_notify.o: $(ARBHOME)/INCLUDE/arb_core.h
348arb_notify.o: $(ARBHOME)/INCLUDE/arb_error.h
349arb_notify.o: $(ARBHOME)/INCLUDE/arb_mem.h
350arb_notify.o: $(ARBHOME)/INCLUDE/arb_msg.h
351arb_notify.o: $(ARBHOME)/INCLUDE/arb_string.h
352arb_notify.o: $(ARBHOME)/INCLUDE/arbdb.h
353arb_notify.o: $(ARBHOME)/INCLUDE/arbdb_base.h
354arb_notify.o: $(ARBHOME)/INCLUDE/arbdbt.h
355arb_notify.o: $(ARBHOME)/INCLUDE/arbtools.h
356arb_notify.o: $(ARBHOME)/INCLUDE/attributes.h
357arb_notify.o: $(ARBHOME)/INCLUDE/cxxforward.h
358arb_notify.o: $(ARBHOME)/INCLUDE/downcast.h
359arb_notify.o: $(ARBHOME)/INCLUDE/dupstr.h
360arb_notify.o: $(ARBHOME)/INCLUDE/gccver.h
361arb_notify.o: $(ARBHOME)/INCLUDE/smartptr.h
362arb_notify.o: $(ARBHOME)/INCLUDE/static_assert.h
363arb_notify.o: $(ARBHOME)/INCLUDE/test_global.h
364
365arb_perf_test.o: $(ARBHOME)/INCLUDE/ad_prot.h
366arb_perf_test.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
367arb_perf_test.o: $(ARBHOME)/INCLUDE/arb_assert.h
368arb_perf_test.o: $(ARBHOME)/INCLUDE/arb_core.h
369arb_perf_test.o: $(ARBHOME)/INCLUDE/arb_error.h
370arb_perf_test.o: $(ARBHOME)/INCLUDE/arb_mem.h
371arb_perf_test.o: $(ARBHOME)/INCLUDE/arb_msg.h
372arb_perf_test.o: $(ARBHOME)/INCLUDE/arb_string.h
373arb_perf_test.o: $(ARBHOME)/INCLUDE/arbdb.h
374arb_perf_test.o: $(ARBHOME)/INCLUDE/arbdb_base.h
375arb_perf_test.o: $(ARBHOME)/INCLUDE/arbdbt.h
376arb_perf_test.o: $(ARBHOME)/INCLUDE/arbtools.h
377arb_perf_test.o: $(ARBHOME)/INCLUDE/attributes.h
378arb_perf_test.o: $(ARBHOME)/INCLUDE/cxxforward.h
379arb_perf_test.o: $(ARBHOME)/INCLUDE/downcast.h
380arb_perf_test.o: $(ARBHOME)/INCLUDE/dupstr.h
381arb_perf_test.o: $(ARBHOME)/INCLUDE/gccver.h
382arb_perf_test.o: $(ARBHOME)/INCLUDE/smartptr.h
383arb_perf_test.o: $(ARBHOME)/INCLUDE/static_assert.h
384arb_perf_test.o: $(ARBHOME)/INCLUDE/test_global.h
385
386arb_primer.o: $(ARBHOME)/INCLUDE/ad_prot.h
387arb_primer.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
388arb_primer.o: $(ARBHOME)/INCLUDE/arb_assert.h
389arb_primer.o: $(ARBHOME)/INCLUDE/arb_core.h
390arb_primer.o: $(ARBHOME)/INCLUDE/arb_error.h
391arb_primer.o: $(ARBHOME)/INCLUDE/arb_mem.h
392arb_primer.o: $(ARBHOME)/INCLUDE/arb_msg.h
393arb_primer.o: $(ARBHOME)/INCLUDE/arb_strarray.h
394arb_primer.o: $(ARBHOME)/INCLUDE/arb_string.h
395arb_primer.o: $(ARBHOME)/INCLUDE/arbdb.h
396arb_primer.o: $(ARBHOME)/INCLUDE/arbdb_base.h
397arb_primer.o: $(ARBHOME)/INCLUDE/arbdbt.h
398arb_primer.o: $(ARBHOME)/INCLUDE/arbtools.h
399arb_primer.o: $(ARBHOME)/INCLUDE/attributes.h
400arb_primer.o: $(ARBHOME)/INCLUDE/cxxforward.h
401arb_primer.o: $(ARBHOME)/INCLUDE/downcast.h
402arb_primer.o: $(ARBHOME)/INCLUDE/dupstr.h
403arb_primer.o: $(ARBHOME)/INCLUDE/gccver.h
404arb_primer.o: $(ARBHOME)/INCLUDE/smartptr.h
405arb_primer.o: $(ARBHOME)/INCLUDE/static_assert.h
406arb_primer.o: $(ARBHOME)/INCLUDE/test_global.h
407
408arb_probe.o: $(ARBHOME)/INCLUDE/ad_prot.h
409arb_probe.o: $(ARBHOME)/INCLUDE/aisc_global.h
410arb_probe.o: $(ARBHOME)/INCLUDE/arb_assert.h
411arb_probe.o: $(ARBHOME)/INCLUDE/arb_core.h
412arb_probe.o: $(ARBHOME)/INCLUDE/arb_defs.h
413arb_probe.o: $(ARBHOME)/INCLUDE/arb_diff.h
414arb_probe.o: $(ARBHOME)/INCLUDE/arb_error.h
415arb_probe.o: $(ARBHOME)/INCLUDE/arb_mem.h
416arb_probe.o: $(ARBHOME)/INCLUDE/arb_msg.h
417arb_probe.o: $(ARBHOME)/INCLUDE/arb_strarray.h
418arb_probe.o: $(ARBHOME)/INCLUDE/arb_strbuf.h
419arb_probe.o: $(ARBHOME)/INCLUDE/arb_string.h
420arb_probe.o: $(ARBHOME)/INCLUDE/arbdb.h
421arb_probe.o: $(ARBHOME)/INCLUDE/arbdb_base.h
422arb_probe.o: $(ARBHOME)/INCLUDE/arbtools.h
423arb_probe.o: $(ARBHOME)/INCLUDE/attributes.h
424arb_probe.o: $(ARBHOME)/INCLUDE/bytestring.h
425arb_probe.o: $(ARBHOME)/INCLUDE/client.h
426arb_probe.o: $(ARBHOME)/INCLUDE/client_types.h
427arb_probe.o: $(ARBHOME)/INCLUDE/cxxforward.h
428arb_probe.o: $(ARBHOME)/INCLUDE/dupstr.h
429arb_probe.o: $(ARBHOME)/INCLUDE/gccver.h
430arb_probe.o: $(ARBHOME)/INCLUDE/PT_com.h
431arb_probe.o: $(ARBHOME)/INCLUDE/RegExpr.hxx
432arb_probe.o: $(ARBHOME)/INCLUDE/servercntrl.h
433arb_probe.o: $(ARBHOME)/INCLUDE/smartptr.h
434arb_probe.o: $(ARBHOME)/INCLUDE/test_global.h
435arb_probe.o: $(ARBHOME)/INCLUDE/test_unit.h
436
437arb_probe_match.o: $(ARBHOME)/INCLUDE/ad_prot.h
438arb_probe_match.o: $(ARBHOME)/INCLUDE/aisc_global.h
439arb_probe_match.o: $(ARBHOME)/INCLUDE/arb_assert.h
440arb_probe_match.o: $(ARBHOME)/INCLUDE/arb_core.h
441arb_probe_match.o: $(ARBHOME)/INCLUDE/arb_error.h
442arb_probe_match.o: $(ARBHOME)/INCLUDE/arb_mem.h
443arb_probe_match.o: $(ARBHOME)/INCLUDE/arb_msg.h
444arb_probe_match.o: $(ARBHOME)/INCLUDE/arb_string.h
445arb_probe_match.o: $(ARBHOME)/INCLUDE/arbdb.h
446arb_probe_match.o: $(ARBHOME)/INCLUDE/arbdb_base.h
447arb_probe_match.o: $(ARBHOME)/INCLUDE/arbtools.h
448arb_probe_match.o: $(ARBHOME)/INCLUDE/attributes.h
449arb_probe_match.o: $(ARBHOME)/INCLUDE/bytestring.h
450arb_probe_match.o: $(ARBHOME)/INCLUDE/client.h
451arb_probe_match.o: $(ARBHOME)/INCLUDE/client_types.h
452arb_probe_match.o: $(ARBHOME)/INCLUDE/cxxforward.h
453arb_probe_match.o: $(ARBHOME)/INCLUDE/dupstr.h
454arb_probe_match.o: $(ARBHOME)/INCLUDE/gccver.h
455arb_probe_match.o: $(ARBHOME)/INCLUDE/PT_com.h
456arb_probe_match.o: $(ARBHOME)/INCLUDE/smartptr.h
457arb_probe_match.o: $(ARBHOME)/INCLUDE/test_global.h
458
459arb_read_tree.o: $(ARBHOME)/INCLUDE/ad_prot.h
460arb_read_tree.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
461arb_read_tree.o: $(ARBHOME)/INCLUDE/arb_assert.h
462arb_read_tree.o: $(ARBHOME)/INCLUDE/arb_core.h
463arb_read_tree.o: $(ARBHOME)/INCLUDE/arb_defs.h
464arb_read_tree.o: $(ARBHOME)/INCLUDE/arb_error.h
465arb_read_tree.o: $(ARBHOME)/INCLUDE/arb_mem.h
466arb_read_tree.o: $(ARBHOME)/INCLUDE/arb_msg.h
467arb_read_tree.o: $(ARBHOME)/INCLUDE/arb_strbuf.h
468arb_read_tree.o: $(ARBHOME)/INCLUDE/arb_string.h
469arb_read_tree.o: $(ARBHOME)/INCLUDE/arbdb.h
470arb_read_tree.o: $(ARBHOME)/INCLUDE/arbdb_base.h
471arb_read_tree.o: $(ARBHOME)/INCLUDE/arbdbt.h
472arb_read_tree.o: $(ARBHOME)/INCLUDE/arbtools.h
473arb_read_tree.o: $(ARBHOME)/INCLUDE/attributes.h
474arb_read_tree.o: $(ARBHOME)/INCLUDE/cxxforward.h
475arb_read_tree.o: $(ARBHOME)/INCLUDE/downcast.h
476arb_read_tree.o: $(ARBHOME)/INCLUDE/dupstr.h
477arb_read_tree.o: $(ARBHOME)/INCLUDE/gccver.h
478arb_read_tree.o: $(ARBHOME)/INCLUDE/smartptr.h
479arb_read_tree.o: $(ARBHOME)/INCLUDE/static_assert.h
480arb_read_tree.o: $(ARBHOME)/INCLUDE/test_global.h
481arb_read_tree.o: $(ARBHOME)/INCLUDE/TreeNode.h
482arb_read_tree.o: $(ARBHOME)/INCLUDE/TreeRead.h
483
484arb_replace.o: $(ARBHOME)/INCLUDE/ad_prot.h
485arb_replace.o: $(ARBHOME)/INCLUDE/arb_assert.h
486arb_replace.o: $(ARBHOME)/INCLUDE/arb_core.h
487arb_replace.o: $(ARBHOME)/INCLUDE/arb_error.h
488arb_replace.o: $(ARBHOME)/INCLUDE/arb_file.h
489arb_replace.o: $(ARBHOME)/INCLUDE/arb_mem.h
490arb_replace.o: $(ARBHOME)/INCLUDE/arb_msg.h
491arb_replace.o: $(ARBHOME)/INCLUDE/arb_strbuf.h
492arb_replace.o: $(ARBHOME)/INCLUDE/arb_string.h
493arb_replace.o: $(ARBHOME)/INCLUDE/arbdb.h
494arb_replace.o: $(ARBHOME)/INCLUDE/arbdb_base.h
495arb_replace.o: $(ARBHOME)/INCLUDE/arbtools.h
496arb_replace.o: $(ARBHOME)/INCLUDE/attributes.h
497arb_replace.o: $(ARBHOME)/INCLUDE/cxxforward.h
498arb_replace.o: $(ARBHOME)/INCLUDE/dupstr.h
499arb_replace.o: $(ARBHOME)/INCLUDE/gccver.h
500arb_replace.o: $(ARBHOME)/INCLUDE/smartptr.h
501arb_replace.o: $(ARBHOME)/INCLUDE/test_global.h
502
503arb_test.o: $(ARBHOME)/INCLUDE/ad_prot.h
504arb_test.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
505arb_test.o: $(ARBHOME)/INCLUDE/arb_assert.h
506arb_test.o: $(ARBHOME)/INCLUDE/arb_core.h
507arb_test.o: $(ARBHOME)/INCLUDE/arb_defs.h
508arb_test.o: $(ARBHOME)/INCLUDE/arb_diff.h
509arb_test.o: $(ARBHOME)/INCLUDE/arb_error.h
510arb_test.o: $(ARBHOME)/INCLUDE/arb_file.h
511arb_test.o: $(ARBHOME)/INCLUDE/arb_mem.h
512arb_test.o: $(ARBHOME)/INCLUDE/arb_msg.h
513arb_test.o: $(ARBHOME)/INCLUDE/arb_sleep.h
514arb_test.o: $(ARBHOME)/INCLUDE/arb_string.h
515arb_test.o: $(ARBHOME)/INCLUDE/arbdb.h
516arb_test.o: $(ARBHOME)/INCLUDE/arbdb_base.h
517arb_test.o: $(ARBHOME)/INCLUDE/arbdbt.h
518arb_test.o: $(ARBHOME)/INCLUDE/arbtools.h
519arb_test.o: $(ARBHOME)/INCLUDE/attributes.h
520arb_test.o: $(ARBHOME)/INCLUDE/command_output.h
521arb_test.o: $(ARBHOME)/INCLUDE/cxxforward.h
522arb_test.o: $(ARBHOME)/INCLUDE/downcast.h
523arb_test.o: $(ARBHOME)/INCLUDE/dupstr.h
524arb_test.o: $(ARBHOME)/INCLUDE/gccver.h
525arb_test.o: $(ARBHOME)/INCLUDE/smartptr.h
526arb_test.o: $(ARBHOME)/INCLUDE/static_assert.h
527arb_test.o: $(ARBHOME)/INCLUDE/test_global.h
528arb_test.o: $(ARBHOME)/INCLUDE/test_unit.h
529arb_test.o: $(ARBHOME)/INCLUDE/ut_valgrinded.h
530
531arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/ad_prot.h
532arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/ad_t_prot.h
533arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/arb_assert.h
534arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/arb_core.h
535arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/arb_error.h
536arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/arb_mem.h
537arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/arb_msg.h
538arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/arb_string.h
539arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/arbdb.h
540arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/arbdb_base.h
541arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/arbdbt.h
542arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/arbtools.h
543arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/attributes.h
544arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/cxxforward.h
545arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/downcast.h
546arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/dupstr.h
547arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/gccver.h
548arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/smartptr.h
549arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/static_assert.h
550arb_write_tree_comment.o: $(ARBHOME)/INCLUDE/test_global.h
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