| ../ | 
            
    
      | awt |  | 18092 | 6 years | westram | * full update from child 'fts' into 'trunk'
    - implements #562
  * … | 
    
      | awtc |  | 12396 | 11 years | westram | * do not export error from
    - arb_look_and_start_server()
    - … | 
    
      | consensus |  | 14425 | 10 years | westram | * reintegrates 'consensus' into 'trunk'
    - fixes #663 (consistent … | 
    
      | cpro |  | 11629 | 12 years | epruesse | remove "SAI→Other→Positional Variability" feature (decided in #359)
 … | 
    
      | edit4 |  | 15223 | 9 years | westram | * reintegrates 'flags' into 'trunk'
    - DRYed
      * group … | 
    
      | faligner |  | 13725 | 11 years | westram | * add config manager to integrated aligners | 
    
      | merge |  | 18092 | 6 years | westram | * full update from child 'fts' into 'trunk'
    - implements #562
  * … | 
    
      | pars |  | 13625 | 11 years | westram | * reintegrates 'pars' into 'trunk'
    - fixes #528, #609, #620, #631, … | 
    
      | phylo |  | 14622 | 10 years | westram | * reintegrates 'ui' into 'trunk'
    - implements #656
    - adds … | 
    
      | query |  | 14786 | 10 years | westram | * reintegrates 'gde' into 'trunk'
    - fixes #695
  * adds: … | 
    
      | window |  | 8607 | 14 years | westram | merge from e4fix [8135] [8136] [8137] [8138] [8139] [8140] [8141] … | 
    
      | ad_align.fig | 1.7 KB
         | 12754 | 11 years | westram | * reintegrates 'alilink' into 'trunk'
    - DRYed ali admin(s)
  * … | 
    
      | ad_branch.fig | 1.8 KB
         | 14622 | 10 years | westram | * reintegrates 'ui' into 'trunk'
    - implements #656
    - adds … | 
    
      | ad_cons_tree.fig | 1.0 KB
         | 8587 | 14 years | westram | * create consensus  from gui | 
    
      | ad_conv.fig | 622 bytes
         | 14786 | 10 years | westram | * reintegrates 'gde' into 'trunk'
    - fixes #695
  * adds: … | 
    
      | ad_delof.fig | 838 bytes
         | 1719 | 22 years | westram | updated (to ensure correct window sizes) | 
    
      | ad_ext.fig | 1.4 KB
         | 12848 | 11 years | westram | * reintegrates 'fix' into 'trunk'
    - removes calls to … | 
    
      | ad_ext_group.fig | 836 bytes
         | 12848 | 11 years | westram | * reintegrates 'fix' into 'trunk'
    - removes calls to … | 
    
      | ad_fcrea.fig | 275 bytes
         | 2 | 25 years | oldcode | Initial revision | 
    
      | ad_gen_create.fig | 2.2 KB
         | 8607 | 14 years | westram | merge from e4fix [8135] [8136] [8137] [8138] [8139] [8140] [8141] … | 
    
      | ad_kreo.fig | 1.1 KB
         | 7770 | 14 years | westram | merge from dev [7679] [7683] [7684] [7685] [7686]
  * ARBDB → CORE
   … | 
    
      | ad_one_tree.fig | 604 bytes
         | 11423 | 12 years | westram | * reintegrates '  ' into 'trunk':
   - topology ordering (beautify … | 
    
      | ad_query.fig | 2.6 KB
         | 5865 | 17 years | westram | * replaced REFRESH button but sort-toggle
	  - default sort order and … | 
    
      | ad_selManNam.fig | 971 bytes
         | 1288 | 23 years | richter | belogs to manual selection of valid name | 
    
      | ad_spec.fig | 1.1 KB
         | 15982 | 8 years | westram | * full update from child 'fix' into 'trunk'
    - fixes #478
  * adds: … | 
    
      | ad_spec_nn.fig | 2.2 KB
         | 14622 | 10 years | westram | * reintegrates 'ui' into 'trunk'
    - implements #656
    - adds … | 
    
      | ad_spec_nnm.fig | 2.1 KB
         | 14786 | 10 years | westram | * reintegrates 'gde' into 'trunk'
    - fixes #695
  * adds: … | 
    
      | ad_tree.fig | 1.6 KB
         | 17160 | 7 years | westram | * reintegrates 'group' into 'trunk'
    - misc. cleanup:
      * group … | 
    
      | arb_intro.fig | 2.8 KB
         | 16259 | 8 years | westram | * show build date in intro window | 
    
      | calltexe.fig | 595 bytes
         | 2 | 25 years | oldcode | Initial revision | 
    
      | chimera_check.fig | 1.8 KB
         | 14786 | 10 years | westram | * reintegrates 'gde' into 'trunk'
    - fixes #695
  * adds: … | 
    
      | compare_taxonomy.fig | 1.7 KB
         | 17160 | 7 years | westram | * reintegrates 'group' into 'trunk'
    - misc. cleanup:
      * group … | 
    
      | compare_topo.fig | 947 bytes
         | 17342 | 7 years | westram | * reintegrates 'group' into 'trunk'
    - implements #780
  * adds: … | 
    
      | concatenate.fig | 1.3 KB
         | 14087 | 10 years | westram | * deny to use source- as target-alignment in "concat alignments" | 
    
      | dbbrowser.fig | 1.1 KB
         | 14025 | 10 years | westram | * reintegrates 'markers' into 'trunk'
  * adds:
    - … | 
    
      | di_cancel.fig | 984 bytes
         | 2 | 25 years | oldcode | Initial revision | 
    
      | di_clusters.fig | 2.1 KB
         | 12877 | 11 years | westram | * reintegrates 'cluster' into 'trunk'
    - implements #259
  * adds:
 … | 
    
      | di_ge_ma.fig | 3.9 KB
         | 11278 | 12 years | westram | * added two automation toggles to ARB_DIST
    - 'Auto recalculate' … | 
    
      | displayField.fig | 3.2 KB
         | 14093 | 10 years | westram | * SAI/PROBE match
    - 'Select display field' window
      * document … | 
    
      | ed_al_ex.fig | 1.0 KB
         | 2 | 25 years | oldcode | Initial revision | 
    
      | ed_al_sp.fig | 3.2 KB
         | 2 | 25 years | oldcode | Initial revision | 
    
      | ed_key.fig | 981 bytes
         | 13753 | 11 years | westram | * edit4 key mappings
    - added config manager
    - use 2-column … | 
    
      | fileselect.fig | 970 bytes
         | 6223 | 16 years | westram | * implemented file selection box (this is the first modal window using … | 
    
      | fts_ruledef.fig | 2.1 KB
         | 18092 | 6 years | westram | * full update from child 'fts' into 'trunk'
    - implements #562
  * … | 
    
      | fts_select.fig | 1.3 KB
         | 18092 | 6 years | westram | * full update from child 'fts' into 'trunk'
    - implements #562
  * … | 
    
      | gde3item.fig | 2.1 KB
         | 13704 | 11 years | westram | * add config-managers to all GDE windows
    - automatically handles … | 
    
      | gdeitem.fig | 1.4 KB
         | 13704 | 11 years | westram | * add config-managers to all GDE windows
    - automatically handles … | 
    
      | gdeitem_simple.fig | 584 bytes
         | 13704 | 11 years | westram | * add config-managers to all GDE windows
    - automatically handles … | 
    
      | gen_options.fig | 2.6 KB
         | 14089 | 10 years | westram | * merge 2 genemap property windows
  * document genemap properties, … | 
    
      | group_search.fig | 4.0 KB
         | 15966 | 8 years | westram | * reintegrates 'group' into 'trunk'
    - implements #652 (group … | 
    
      | group_trees.fig | 779 bytes
         | 15966 | 8 years | westram | * reintegrates 'group' into 'trunk'
    - implements #652 (group … | 
    
      | help.fig | 923 bytes
         | 14259 | 10 years | westram | * belongs to [14258] | 
    
      | insdel.fig | 741 bytes
         | 9633 | 13 years | westram | * reintegrated branch 'sai'
   - providing basic insert/delete by SAI | 
    
      | insdel_sai.fig | 1.6 KB
         | 13699 | 11 years | westram | * insert/delete by SAI
    - added config manager + predefined configs … | 
    
      | item_shader_cfg.fig | 2.1 KB
         | 15054 | 9 years | westram | * reintegrates 'color' into 'trunk'
    - implements #443 (+parts of … | 
    
      | iupac.fig | 2.4 KB
         | 17593 | 7 years | westram | * reintegrates 'fix' into 'trunk'
    - performs #798
      * adds … | 
    
      | join_species.fig | 907 bytes
         | 14786 | 10 years | westram | * reintegrates 'gde' into 'trunk'
    - fixes #695
  * adds: … | 
    
      | load_box.fig | 858 bytes
         | 9797 | 13 years | westram | * reintegrated branch 'merge'
   - implements #194 | 
    
      | macro_select.fig | 1.2 KB
         | 11778 | 12 years | westram | * reintegrates 'macros' into 'trunk'
    - implements #456
  * adds:
  … | 
    
      | mark_configs.fig | 959 bytes
         | 14025 | 10 years | westram | * reintegrates 'markers' into 'trunk'
  * adds:
    - … | 
    
      | merge_species.fig | 850 bytes
         | 14786 | 10 years | westram | * reintegrates 'gde' into 'trunk'
    - fixes #695
  * adds: … | 
    
      | message.fig | 489 bytes
         | 1719 | 22 years | westram | updated (to ensure correct window sizes) | 
    
      | move_groups.fig | 2.7 KB
         | 17350 | 7 years | westram | * GUI cosmetic | 
    
      | mp_results.fig | 1.7 KB
         | 8771 | 13 years | westram | * multi probe
    - use generic sellist collect buttons
      * … | 
    
      | multiprobe.fig | 2.7 KB
         | 8771 | 13 years | westram | * multi probe
    - use generic sellist collect buttons
      * … | 
    
      | nt_selection.fig | 1.5 KB
         | 14256 | 10 years | westram | * reintegrates 'config' into 'trunk' (implements #607)
  * adds: … | 
    
      | nt_sort.fig | 924 bytes
         | 14786 | 10 years | westram | * reintegrates 'gde' into 'trunk'
    - fixes #695
  * adds: … | 
    
      | optimize.fig | 640 bytes
         | 12709 | 11 years | westram | * button text expanded in [12689]
    - did not fit into button
    - … | 
    
      | pd_admin.fig | 1.5 KB
         | 16391 | 8 years | westram | * full update from child 'aci' into 'trunk'
    - allow to view … | 
    
      | pd_main.fig | 2.5 KB
         | 6141 | 16 years | westram | * spellchecked all (phew) | 
    
      | pd_match.fig | 2.3 KB
         | 13712 | 11 years | westram | * add config manager to probe match | 
    
      | pd_match_iupac.fig | 926 bytes
         | 14123 | 10 years | westram | * merge [14030] + [14032] from 'markers' into 'trunk' | 
    
      | pd_match_probe_collection.fig | 3.0 KB
         | 13942 | 10 years | westram | * added a MODIFY button (replaces selected probe)
  * selecting a … | 
    
      | pd_match_with_specificity.fig | 1.5 KB
         | 13947 | 10 years | westram | * add AUTOMATCH to probe collection | 
    
      | pd_reslt.fig | 434 bytes
         | 8762 | 13 years | westram | * load/save for selection lists
    - generic code can be configured … | 
    
      | pd_spec.fig | 2.2 KB
         | 7987 | 14 years | westram | * support new probe match params introduced in [7986] from ARB_NT … | 
    
      | pm_spec.fig | 2.3 KB
         | 8757 | 13 years | westram | * probe match no longer calculates different results depending on … | 
    
      | prd_main.fig | 3.9 KB
         | 480 | 24 years | westram | new button for 'init from gene' | 
    
      | probeSaiColors.fig | 1.6 KB
         | 2610 | 22 years | yadhu | Changes to Sai Probe Visualization Module
1. Selection of species name … | 
    
      | proteinViewer.fig | 6.2 KB
         | 4265 | 19 years | yadhu | Changes to ProtView? Module
1. Added REFRESH button to ProtView? Dialog … | 
    
      | realign_dna.fig | 1.3 KB
         | 16576 | 8 years | westram | * painful merge from 'alilink' into 'trunk'
    - attempt to eliminate … | 
    
      | RNA3D_ChangeMolecule.fig | 3.0 KB
         | 3945 | 20 years | yadhu | Changes of RNA3D Module
1. Added New PDB data files for handling large … | 
    
      | RNA3D_DisplayBases.fig | 4.4 KB
         | 3639 | 21 years | yadhu | Modifications and Addition of Xfig files for RNA3D Module. | 
    
      | RNA3D_DisplayHelices.fig | 4.6 KB
         | 3941 | 20 years | yadhu | Changes to RNA3D module
1. Now, it can handle Large Subunit rRNA as well. | 
    
      | RNA3D_DisplayOptions.fig | 4.1 KB
         | 3639 | 21 years | yadhu | Modifications and Addition of Xfig files for RNA3D Module. | 
    
      | RNA3D_SeqMapping.fig | 5.0 KB
         | 3940 | 20 years | yadhu | Changes to RNA3D program:
1. Added sychronization of colors with the … | 
    
      | saiColorRange.fig | 1.5 KB
         | 4252 | 19 years | yadhu | Added "set color" button to VisualizeSAI function. | 
    
      | save_as.fig | 1.3 KB
         | 14556 | 10 years | westram | * reintegrates 'dbsave' into 'trunk'
    - implements #665
  * adds: … | 
    
      | sec_bonddef.fig | 391 bytes
         | 4811 | 18 years | westram | - only define x-positions, y calculated now | 
    
      | sec_display.fig | 1.7 KB
         | 14145 | 10 years | westram | * add scalers to SECEDIT display options | 
    
      | sec_imexport.fig | 1.0 KB
         | 2 | 25 years | oldcode | Initial revision | 
    
      | sel_box.fig | 1.1 KB
         | 14488 | 10 years | westram | * remove duplicate CLOSE/CANCEL buttons (they only suggest window is … | 
    
      | sel_box_nds.fig | 1.2 KB
         | 14488 | 10 years | westram | * remove duplicate CLOSE/CANCEL buttons (they only suggest window is … | 
    
      | sel_box_tree.fig | 1.1 KB
         | 14696 | 10 years | westram | * add missing 'help' label to xfig (fixes #693)
  * minor layout fixes | 
    
      | sel_box_user.fig | 1.3 KB
         | 8607 | 14 years | westram | merge from e4fix [8135] [8136] [8137] [8138] [8139] [8140] [8141] … | 
    
      | select_simple.fig | 383 bytes
         | 8696 | 14 years | westram | * merge from saiali log:branches/saiali@8635-8695
    - unalign center … | 
    
      | seq_quality.fig | 5.0 KB
         | 13705 | 11 years | westram | * add config-manager to sequence quality | 
    
      | sl_l_box.fig | 926 bytes
         | 8762 | 13 years | westram | * load/save for selection lists
    - generic code can be configured … | 
    
      | sl_s_box.fig | 1.0 KB
         | 8762 | 13 years | westram | * load/save for selection lists
    - generic code can be configured … | 
    
      | stat_main.fig | 394 bytes
         | 2 | 25 years | oldcode | Initial revision | 
    
      | status.fig | 852 bytes
         | 6050 | 16 years | westram | * removed frame from status window (use 2 points to set size). ARB … | 
    
      | submiss.fig | 1.2 KB
         | 1070 | 23 years | westram | added help | 
    
      | syncscroll.fig | 613 bytes
         | 15340 | 9 years | westram | * reintegrates 'sync' into 'trunk'
    - implements #683
  * adds: … | 
    
      | trackali.fig | 775 bytes
         | 4673 | 18 years | westram | - sequence/alignment change tracker | 
    
      | transpro.fig | 1.6 KB
         | 2388 | 22 years | westram | toggle to write 'transl_table' and 'codon_start' | 
    
      | tree_export.fig | 1.2 KB
         | 14488 | 10 years | westram | * remove duplicate CLOSE/CANCEL buttons (they only suggest window is … | 
    
      | visualizeSAI.fig | 3.8 KB
         | 6141 | 16 years | westram | * spellchecked all (phew) |