Importing genome data from embl crashes ARB

[aboeckma]

• Click Create And Import in the intro window
• select ​that file
• click 'import genome data in EMBL, GenBank? ….'
• click GO
• BOOOM

GBENTRY::stored_external (this=(const GBENTRY *) 0x0)
GBENTRY::size (this=(const GBENTRY *) 0x0)
GB_read_count (gbd=(GBDATA *) 0x0)
GEN_write_position (gb_gene=(class GBDATA *) 0x103d42a80, pos=(const GEN_position *) 0x103d38b20)
DBwriter::writeFeature (this=(DBwriter *) 0x7fff5fbee308, feature=(const Feature &) @0x103d38360: {\n  type = {\n    _M_dataplus = {\n      <std::allocator<char>> = {\n        <__gnu_cxx::new_allocator<char>> = {<No data fields>}, <No data fields>}, \n      members of std::basic_string<char>::_Alloc_hider: \n      _M_p = 0x103d387e8 \"source\"\n    }, \n    static npos = 18446744073709551615\n  }, \n  location = {\n    object = 0x103d383c0\n  }, \n  qualifiers = {\n    _M_t = {\n      _M_impl = {\n        <std::allocator<std::_Rb_tree_node<std::pair<const std::basic_string<char>, std::basic_string<char> > > >> = {\n          <__gnu_cxx::new_allocator<std::_Rb_tree_node<std::pair<const std::basic_string<char>, std::basic_string<char> > > >> = {<No data fields>}, <No data fields>}, \n        members of std::_Rb_tree<std::basic_string<char>, std::pair<const std::basic_string<char>, std::basic_string<char> >, std::_Select1st<std::pair<const std::basic_string<char>, std::basic_string<char> > >, std::less<std::basic_string<char> >, std::allocator<std::pair<const std::basic_string<char>, std::basic_string<char> > > >::_Rb_tree_impl<std::less<std::basic_string<char> >, false>: \n        _M_key_compare = {\n          <std::binary_function<std::basic_string<char>, std::basic_string<char>, bool>> = {<No data fields>}, <No data fields>}, \n        _M_header = {\n          _M_color = std::_S_red, \n          _M_parent = 0x103d38200, \n          _M_left = 0x103d36ed0, \n          _M_right = 0x103d37380\n        }, \n        _M_node_count = 8\n      }\n    }\n  }\n})
Importer::parseFeatureTable (this=(Importer *) 0x103d3dca0)
EmblImporter::import_section (this=(EmblImporter *) 0x103d3dca0)
Importer::import (this=(Importer *) 0x103d3dca0)
GI_importGenomeFile (session=(ImportSession &) @0x7fff5fbfe648: {\n  <Noncopyable> = {<No data fields>}, \n  members of ImportSession: \n  _vptr$ImportSession = 0x1003bc1f8, \n  gb_species_data = 0x103d3ea00, \n  und_species = 0x103d3fde0, \n  ok_to_ignore_wrong_start_codon = 0x103d3ebb0\n}, file_name=0x103d3fd90 \"/Users/mpimm/Downloads/KC821607.txt\", ali_name=0x104b27ee0 \"ali_genom\")
AWTC_import_go_cb (aww=(AW_window *) 0x102b3dfd0)
StrictlyTypedCallback<void, AW_window*, long, long>::operator() (this=(const StrictlyTypedCallback<void, AW_window *, long, long> *) 0x102b4a218, p1=(FP1) 0x102b3dfd0, p2=0, p3=0)
Callback_FVV<void, AW_window*>::operator() (this=(const Callback_FVV<void, AW_window *> *) 0x102b4a218, fixed=(AW_window *) 0x102b3dfd0)
AW_cb::run_callbacks (this=(AW_cb *) 0x102b4a210)
AW_window::click_handler (aw_cb_struct=(gpointer) 0x102b4a210)
_g_closure_invoke_va ()
g_signal_emit_valist ()
g_signal_emit ()
gtk_real_button_released ()
_g_closure_invoke_va ()
g_signal_emit_valist ()
g_signal_emit ()
gtk_button_button_release ()
_gtk_marshal_BOOLEAN__BOXED ()
g_closure_invoke ()
signal_emit_unlocked_R ()
g_signal_emit_valist ()
g_signal_emit ()
gtk_widget_event_internal ()
gtk_propagate_event ()
gtk_main_do_event ()
gdk_event_dispatch ()
g_main_context_dispatch ()
g_main_context_iterate ()
g_main_loop_run ()
gtk_main ()
AW_root::main_loop (this=(AW_root *) 0x102b15670)
startup_gui (cl=(NtreeCommandLine &) @0x7fff5fbff9c8: {\n  <Noncopyable> = {<No data fields>}, \n  members of NtreeCommandLine: \n  _vptr$NtreeCommandLine = 0x1003ba728, \n  arg_count = 0, \n  args = 0x7fff5fbffa68, \n  help_requested = false, \n  do_import = false, \n  macro_name = 0x0\n}, error=(ARB_ERROR &) @0x7fff5fbff9c0: {\n  error = {\n    object = 0x103d12340\n  }\n})
ARB_main (argc=1, argv=(char **) 0x7fff5fbffa60)
main (argc=1, argv=(char **) 0x7fff5fbffa60)

[westram]

by [10271]

[westram]

• deleted attached file (it is in SVN now)

[westram]

• was broken by [7814]