Opened 11 years ago

Last modified 11 years ago

#464 new defect

Check external tool usage with protein alignments

Reported by: westram Owned by: devel
Priority: minor Milestone:
Component: External_tools Version: SVN
Keywords: Cc:

Description (last modified by westram)

  • check whether MrBayes can handle proteins
    • if not → disallow to select protein alignment
    • if it does → fix wrong sequence type in NEXUS input file
      currently contains 
            DATATYPE = RNA
  • check whether !FastTree2 can handle proteins
    • if called with protein-alignment it currently complains 
      Ignored unknown character W (seen 24 times)
Ignored unknown character X (seen 163 times)
Ignored unknown character Y (seen 79 times)
WARNING! ONLY 21.6% NUCLEOTIDE CHARACTERS -- IS THIS REALLY A NUCLEOTIDE ALIGNMENT?
  • test other tools for similar problems

Change History (1)

comment:1 Changed 11 years ago by westram

  • Description modified (diff)
  • Summary changed from MrBayes bails out when a protein alignment is selected to Check external tool usage with protein alignments
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