Opened 11 years ago

Closed 10 years ago

Last modified 9 years ago

#486 closed task (fixed)

import bootstrap support values from RAxML

Reported by: epruesse Owned by: westram
Priority: major Milestone:
Component: External_tools Version: arb-6.0
Keywords: arb6.0-hotfix Cc:

Description

When running with bootstrap, RAxML puts the tree with the bootstrap values into RAxML_bipartitions.viaARB, not into RAxML_bestTree.viaARB

Change History (7)

comment:1 Changed 11 years ago by epruesse

  • Resolution set to wontfix
  • Status changed from new to closed

Will be fixed by RAxML 8 GUI.

comment:2 Changed 10 years ago by westram

  • Milestone changed from arb6 to arb6.1
  • Priority changed from normal to major
  • Resolution wontfix deleted
  • Status changed from closed to reopened
  • Version changed from SVN to arb-6.0

Workaround:

  • while RAxML console window is still open,
    1. select ARB_NT/Tree/Tree admin
    2. click Import
    3. Look for 
      Best-scoring ML tree with support values written to: /home/you/.arb_tmp/number/RAxML_bipartitions.viaARB
      in the RAxML console window.
    4. Copy that filename into the File Name field of the TREE LOAD window and press LOAD

comment:3 Changed 10 years ago by westram

  • Owner changed from devel to westram
  • Status changed from reopened to _started

comment:4 Changed 10 years ago by westram

  • Resolution set to fixed
  • Status changed from _started to closed

by [12553]

comment:5 Changed 10 years ago by westram

To fix it for your arb-6.0 installation:

  • download ​this perl script and
  • save it in your arb-6.0 installation directory as
    PERL_SCRIPTS/ARBTOOLS/raxml2arb.pl

comment:6 Changed 9 years ago by westram

  • Milestone arb6.1 deleted

already hotfixed into arb 6.0.x series

comment:7 Changed 9 years ago by westram

  • Keywords arb6.0-hotfix added

mark arb6.0.x hotfixes

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